High-throughput sequencing of nematode communities from total soil DNA extractions

Response of nematodes to agricultural input levels in various reclaimed and unreclaimed habitats

(2013) Yufei Li et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

High-throughput amplicon sequencing of rRNA genes requires a copy number correction to accurately reflect the effects of management practices on soil nematode community structure

(2013) B. J. Darby et al.   MOLECULAR ECOLOGY

Top 10 plant-parasitic nematodes in molecular plant pathology

(2013) John T. Jones et al.   MOLECULAR PLANT PATHOLOGY

Soil nematode genera that predict specific types of disturbance

(2012) Jie Zhao et al.   APPLIED SOIL ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Nematode Spatial and Ecological Patterns from Tropical and Temperate Rainforests

(2012) Dorota L. Porazinska et al.   PLoS One

Profiling Nematode Communities in Unmanaged Flowerbed and Agricultural Field Soils in Japan by DNA Barcode Sequencing

(2012) Hisashi Morise et al.   PLoS One

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The distribution of nematodes and soil microbial communities across soil aggregate fractions and farm management systems

(2011) Shabeg S. Briar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

(2010) S. CREER et al.   MOLECULAR ECOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Long-term changes in topsoil nematode populations in grazed pasture under elevated atmospheric carbon dioxide

(2009) Gregor W. Yeates et al.   BIOLOGY AND FERTILITY OF SOILS

Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure

(2009) DOROTA L. PORAZINSKA et al.   Molecular Ecology Resources

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity

(2009) DOROTA L. PORAZINSKA et al.   Molecular Ecology Resources

A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences

(2009) Hanny van Megen et al.   NEMATOLOGY

Small Subunit rDNA-Based Phylogeny of the Tylenchida Sheds Light on Relationships Among Some High-Impact Plant-Parasitic Nematodes and the Evolution of Plant Feeding

(2009) M. Holterman et al.   PHYTOPATHOLOGY