Intra-Genomic Variation in the Ribosomal Repeats of Nematodes

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

RIBOSOMAL RNA GENE DIVERSITY, EFFECTIVE POPULATION SIZE, AND EVOLUTIONARY LONGEVITY IN ASEXUAL GLOMEROMYCOTA

(2012) Nicholas W. VanKuren et al.   EVOLUTION

Drift-barrier hypothesis and mutation-rate evolution

(2012) W. Sung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequencing our way towards understanding global eukaryotic biodiversity

(2012) Holly M. Bik et al.   TRENDS IN ECOLOGY & EVOLUTION

Core promoter T-blocks correlate with gene expression levels in C. elegans

(2011) V. Grishkevich et al.   GENOME RESEARCH

Monitoring the Rate and Dynamics of Concerted Evolution in the Ribosomal DNA Repeats of Saccharomyces cerevisiae Using Experimental Evolution

(2011) Austen R.D. Ganley et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme

(2011) Eric J. Hayden et al.   NATURE

Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery

(2011) Jonathan Houseley et al.   NUCLEIC ACIDS RESEARCH

Ribosomal DNA Deletions Modulate Genome-Wide Gene Expression: “rDNA–Sensitive” Genes and Natural Variation

(2011) Silvana Paredes et al.   PLoS Genetics

Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA

(2010) Anthony A Chariton et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

(2010) S. CREER et al.   MOLECULAR ECOLOGY

Second-generation environmental sequencing unmasks marine metazoan biodiversity

(2010) Vera G. Fonseca et al.   Nature Communications

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing

(2009) S. A. James et al.   GENOME RESEARCH

Geographically localised bursts of ribosomal DNA mobility in the grasshopper Podisma pedestris

(2009) P Veltsos et al.   HEREDITY

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity

(2009) DOROTA L. PORAZINSKA et al.   Molecular Ecology Resources

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

A genome-wide view of Caenorhabditis elegans base-substitution mutation processes

(2009) D. R. Denver et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

THE FREQUENCY OF rDNA VARIANTS WITHIN INDIVIDUALS PROVIDES EVIDENCE OF POPULATION HISTORY AND GENE FLOW ACROSS A GRASSHOPPER HYBRID ZONE

(2008) Irene Keller et al.   EVOLUTION

The effect of transposon Pokey insertions on sequence variation in the 28S rRNA gene of Daphnia pulex

(2008) Shiona K. Glass et al.   GENOME

Intragenomic Variation of Fungal Ribosomal Genes Is Higher than Previously Thought

(2008) U. K. Simon et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome sequencing and variant discovery in C. elegans

(2008) LaDeana W Hillier et al.   NATURE METHODS