Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Changes in Bacterial and Fungal Communities across Compost Recipes, Preparation Methods, and Composting Times

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Soil food web properties explain ecosystem services across European land use systems

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Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

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Global biogeography of highly diverse protistan communities in soil

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Architectural design influences the diversity and structure of the built environment microbiome

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Structure, fluctuation and magnitude of a natural grassland soil metagenome

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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

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Microbial interactions: from networks to models

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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

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Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

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Sequencing our way towards understanding global eukaryotic biodiversity

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Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

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An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

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Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally

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Molecular study of worldwide distribution and diversity of soil animals

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Global diversity and distribution of arbuscular mycorrhizal fungi

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Pyrosequencing and mid-infrared spectroscopy reveal distinct aggregate stratification of soil bacterial communities and organic matter composition

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Search and clustering orders of magnitude faster than BLAST

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Macroecological patterns in soil communities

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Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Examining the global distribution of dominant archaeal populations in soil

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Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

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Biodiversity in the dark

(2010) Diana H. Wall et al.   Nature Geoscience

QIIME allows analysis of high-throughput community sequencing data

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Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Molecular detection of anammox bacteria in terrestrial ecosystems: distribution and diversity

(2009) Sylvia Humbert et al.   ISME Journal

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

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A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

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Functional metagenomic profiling of nine biomes

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