High throughput sequencing of RNA transcriptomes in Ruditapes philippinarum identifies genes involved in osmotic stress response

High throughput sequencing of small RNAs transcriptomes in two Crassostrea oysters identifies microRNAs involved in osmotic stress response

(2016) Xuelin Zhao et al.   Scientific Reports

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Immune and stress responses in oysters with insights on adaptation

(2015) Ximing Guo et al.   FISH & SHELLFISH IMMUNOLOGY

Reef-Specific Patterns of Gene Expression Plasticity in Eastern Oysters (Crassostrea virginica)

(2015) Laura E. Eierman et al.   JOURNAL OF HEREDITY

Transcriptome and Molecular Pathway Analysis of the Hepatopancreas in the Pacific White Shrimp Litopenaeus vannamei under Chronic Low-Salinity Stress

(2015) Ke Chen et al.   PLoS One

Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica

(2014) Laura E Eierman et al.   BMC GENOMICS

Who controls the ATP supply in cancer cells? Biochemistry lessons to understand cancer energy metabolism

(2014) Rafael Moreno-Sánchez et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Proteomic signatures of the oyster metabolic response to herpesvirus OsHV-1 μVar infection

(2014) Charlotte Corporeau et al.   Journal of Proteomics

Transcriptome Changes in Eriocheir sinensis Megalopae after Desalination Provide Insights into Osmoregulation and Stress Adaption in Larvae

(2014) Min Hui et al.   PLoS One

Comparative Transcriptome Analysis of Two Oysters, Crassostrea gigas and Crassostrea hongkongensis Provides Insights into Adaptation to Hypo-Osmotic Conditions

(2014) Xuelin Zhao et al.   PLoS One

Identification and expression analysis of differentially expressed genes from shrimp (Penaeus monodon) in response to low salinity stress

(2013) M.S. Shekhar et al.   FISH & SHELLFISH IMMUNOLOGY

Characterization of the Zhikong Scallop (Chlamys farreri) Mantle Transcriptome and Identification of Biomineralization-Related Genes

(2013) Mingjun Shi et al.   MARINE BIOTECHNOLOGY

Transcriptome Analysis Reveals a Rich Gene Set Related to Innate Immunity in the Eastern Oyster (Crassostrea virginica)

(2013) Linlin Zhang et al.   MARINE BIOTECHNOLOGY

Genome and Transcriptome Analyses Provide Insight into the Euryhaline Adaptation Mechanism of Crassostrea gigas

(2013) Jie Meng et al.   PLoS One

Transcriptome Analysis of Portunus trituberculatus in Response to Salinity Stress Provides Insights into the Molecular Basis of Osmoregulation

(2013) Jianjian Lv et al.   PLoS One

Analysis of Pacific oyster larval proteome and its response to high-CO2

(2012) R. Dineshram et al.   MARINE POLLUTION BULLETIN

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Transcriptomic Responses to Salinity Stress in the Pacific Oyster Crassostrea gigas

(2012) Xuelin Zhao et al.   PLoS One

Quantitative proteomics of heavy metal stress responses in Sydney rock oysters

(2012) Sridevi Muralidharan et al.   PROTEOMICS

Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

(2011) Massimo Milan et al.   BMC GENOMICS

Immunological function in marine invertebrates: Responses to environmental perturbation

(2011) R.P. Ellis et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome profiles link environmental variation and physiological response ofMytilus californianusbetween Pacific tides

(2011) Sean P. Place et al.   FUNCTIONAL ECOLOGY

Proteomic response to elevated PCO2 level in eastern oysters, Crassostrea virginica: evidence for oxidative stress

(2011) L. Tomanek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions

(2011) ROBERT W. CHAPMAN et al.   MOLECULAR ECOLOGY

Mass mortality in Pacific oysters is associated with a specific gene expression signature

(2011) MAXINE L. CHANEY et al.   MOLECULAR ECOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols