High throughput sequencing of small RNAs transcriptomes in two Crassostrea oysters identifies microRNAs involved in osmotic stress response

Artificial interspecific backcrosses between the hybrid of female Crassostrea hongkongensis × male C. gigas and the two parental species

(2016) Yuehuan Zhang et al.   AQUACULTURE

Temperature during early development has long-term effects on microRNA expression in Atlantic cod

(2015) Teshome Tilahun Bizuayehu et al.   BMC GENOMICS

The comprehensive immunomodulation of NeurimmiRs in haemocytes of oyster Crassostrea gigas after acetylcholine and norepinephrine stimulation

(2015) Hao Chen et al.   BMC GENOMICS

MicroRNA expression profiles from eggs of different qualities associated with post-ovulatory ageing in rainbow trout (Oncorhynchus mykiss)

(2015) Hao Ma et al.   BMC GENOMICS

Diversity of animal immune receptors and the origins of recognition complexity in the deuterostomes

(2015) Katherine M. Buckley et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Immune and stress responses in oysters with insights on adaptation

(2015) Ximing Guo et al.   FISH & SHELLFISH IMMUNOLOGY

Expression Profiling Analysis of the microRNA Response of Cynoglossus semilaevis to Vibrio anguillarum and Other Stimuli

(2015) Guangye Gong et al.   MARINE BIOTECHNOLOGY

Global analysis of the ovarian microRNA transcriptome: implication for miR-2 and miR-133 regulation of oocyte meiosis in the Chinese mitten crab, Eriocheir sinensis (Crustacea:Decapoda)

(2014) Ya-Nan Song et al.   BMC GENOMICS

High throughput sequencing of two celery varieties small RNAs identifies microRNAs involved in temperature stress response

(2014) Meng-Yao Li et al.   BMC GENOMICS

Integrated analysis of miRNA and mRNA expression profiles in response to Cd exposure in rice seedlings

(2014) Mingfeng Tang et al.   BMC GENOMICS

Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica

(2014) Laura E Eierman et al.   BMC GENOMICS

Identification and comparative analysis of the Pseudosciaena crocea microRNA transcriptome response to poly(I:C) infection using a deep sequencing approach

(2014) Pengzhi Qi et al.   FISH & SHELLFISH IMMUNOLOGY

Role of microRNAs in the immunity process of the flat oyster Ostrea edulis against bonamiosis

(2014) Laura Martín-Gómez et al.   INFECTION GENETICS AND EVOLUTION

Proteomic Basis of Stress Responses in the Gills of the Pacific Oyster Crassostrea gigas

(2014) Yang Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic signatures of the oyster metabolic response to herpesvirus OsHV-1 μVar infection

(2014) Charlotte Corporeau et al.   Journal of Proteomics

MicroRNA repertoire for functional genome research in tilapia identified by deep sequencing

(2014) Biao Yan et al.   MOLECULAR BIOLOGY REPORTS

The Identification and Characteristics of Immune-Related MicroRNAs in Haemocytes of Oyster Crassostrea gigas

(2014) Zhi Zhou et al.   PLoS One

Identification and Comparative Analysis of the Tegillarca granosa Haemocytes MicroRNA Transcriptome in Response to Cd Using a Deep Sequencing Approach

(2014) Yongbo Bao et al.   PLoS One

Identification of Conserved and Novel MicroRNAs in the Pacific Oyster Crassostrea gigas by Deep Sequencing

(2014) Fei Xu et al.   PLoS One

Characterization and Expression Analysis of MicroRNAs in the Tube Foot of Sea Cucumber Apostichopus japonicus

(2014) Hongdi Wang et al.   PLoS One

Comparative Transcriptome Analysis of Two Oysters, Crassostrea gigas and Crassostrea hongkongensis Provides Insights into Adaptation to Hypo-Osmotic Conditions

(2014) Xuelin Zhao et al.   PLoS One

Inter-site differences of zinc susceptibility of the oyster Crassostrea hongkongensis

(2013) Fengjie Liu et al.   AQUATIC TOXICOLOGY

RNA sequencing reveals small RNAs differentially expressed between incipient Japanese threespine sticklebacks

(2013) Jun Kitano et al.   BMC GENOMICS

Argonaute-1 functions as a mitotic regulator by controlling Cyclin B during Drosophila early embryogenesis

(2013) Sreerangam N. C. V. L. Pushpavalli et al.   FASEB JOURNAL

The miR-183/Taok1 Target Pair Is Implicated in Cochlear Responses to Acoustic Trauma

(2013) Minal Patel et al.   PLoS One

Genome and Transcriptome Analyses Provide Insight into the Euryhaline Adaptation Mechanism of Crassostrea gigas

(2013) Jie Meng et al.   PLoS One

Integrative Analysis of miRNA and mRNA Profiles in Response to Ethylene in Rose Petals during Flower Opening

(2013) Haixia Pei et al.   PLoS One

De Novo Assembly of the Sea Cucumber Apostichopus japonicus Hemocytes Transcriptome to Identify miRNA Targets Associated with Skin Ulceration Syndrome

(2013) Pengjuan Zhang et al.   PLoS One

High-Throughput Sequencing Reveals Differential Expression of miRNAs in Intestine from Sea Cucumber during Aestivation

(2013) Muyan Chen et al.   PLoS One

miR-429 regulation of osmotic stress transcription factor 1 (OSTF1) in tilapia during osmotic stress

(2012) Biao Yan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Characterization of skin ulceration syndrome associated microRNAs in sea cucumber Apostichopus japonicus by deep sequencing

(2012) Chenghua Li et al.   FISH & SHELLFISH IMMUNOLOGY

New insights in flat oyster Ostrea edulis resistance against the parasite Bonamia ostreae

(2012) B. Morga et al.   FISH & SHELLFISH IMMUNOLOGY

Molecular cloning, characterization and expression of heat shock protein 70 gene from the oyster Crassostrea hongkongensis responding to thermal stress and exposure of Cu2+ and malachite green

(2012) Zhanhui Zhang et al.   GENE

Analysis of Pacific oyster larval proteome and its response to high-CO2

(2012) R. Dineshram et al.   MARINE POLLUTION BULLETIN

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Transcriptomic Responses to Salinity Stress in the Pacific Oyster Crassostrea gigas

(2012) Xuelin Zhao et al.   PLoS One

Quantitative proteomics of heavy metal stress responses in Sydney rock oysters

(2012) Sridevi Muralidharan et al.   PROTEOMICS

MicroRNA-184 downregulates nuclear receptor corepressor 2 in mouse spermatogenesis

(2011) Jingwen Wu et al.   BMC DEVELOPMENTAL BIOLOGY

Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing

(2011) Qing-Xin Song et al.   BMC PLANT BIOLOGY

Identification and comparative analysis of the Eriocheir sinensis microRNA transcriptome response to Spiroplasma eriocheiris infection using a deep sequencing approach

(2011) Jiangtao Ou et al.   FISH & SHELLFISH IMMUNOLOGY

Identification and expression of immune genes in the flat oyster Ostrea edulis in response to bonamiosis

(2011) Laura Martín-Gómez et al.   GENE

Proteomic response to elevated PCO2 level in eastern oysters, Crassostrea virginica: evidence for oxidative stress

(2011) L. Tomanek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions

(2011) ROBERT W. CHAPMAN et al.   MOLECULAR ECOLOGY

Mass mortality in Pacific oysters is associated with a specific gene expression signature

(2011) MAXINE L. CHANEY et al.   MOLECULAR ECOLOGY

MicroRNAs in Development and Disease

(2011) Danish Sayed et al.   PHYSIOLOGICAL REVIEWS

Posttranscriptional Upregulation by MicroRNAs

(2011) Shobha Vasudevan   Wiley Interdisciplinary Reviews-RNA

microRNAome changes in bystander three-dimensional human tissue models suggest priming of apoptotic pathways

(2010) Olga Kovalchuk et al.   CARCINOGENESIS

MicroRNA-183 family conservation and ciliated neurosensory organ expression

(2010) Marsha L. Pierce et al.   EVOLUTION & DEVELOPMENT

Novel microRNAs in silkworm (Bombyx mori)

(2010) Yimei Cai et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

MicroRNA Functions in Stress Responses

(2010) Anthony K.L. Leung et al.   MOLECULAR CELL

Mammalian microRNAs predominantly act to decrease target mRNA levels

(2010) Huili Guo et al.   NATURE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species

(2009) Diana Bellin et al.   BMC GENOMICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

miR-10 in development and cancer

(2009) A H Lund   CELL DEATH AND DIFFERENTIATION

The deep evolution of metazoan microRNAs

(2009) Benjamin M. Wheeler et al.   EVOLUTION & DEVELOPMENT

Differential transcriptomic responses of Biomphalaria glabrata (Gastropoda, Mollusca) to bacteria and metazoan parasites, Schistosoma mansoni and Echinostoma paraensei (Digenea, Platyhelminthes)

(2009) Coen M. Adema et al.   MOLECULAR IMMUNOLOGY

Repertoire of Bovine miRNA and miRNA-Like Small Regulatory RNAs Expressed upon Viral Infection

(2009) Evgeny A. Glazov et al.   PLoS One

MicroRNA-183 regulates Ezrin expression in lung cancer cells

(2008) Guofu Wang et al.   FEBS LETTERS

Differentially expressed genes of the carpet shell clam Ruditapes decussatus against Perkinsus olseni

(2008) M. Prado-Alvarez et al.   FISH & SHELLFISH IMMUNOLOGY

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH

Identification of Crassostrea ariakensis and Related Oysters by Multiplex Species-Specific PCR

(2008) Haiyan Wang et al.   JOURNAL OF SHELLFISH RESEARCH

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY

The birth and death of microRNA genes in Drosophila

(2008) Jian Lu et al.   NATURE GENETICS