Reef-Specific Patterns of Gene Expression Plasticity in Eastern Oysters (Crassostrea virginica)

Phenotypic plasticity of labile traits in the wild

(2016) Jon E. Brommer   Current Zoology

In absence of local adaptation, plasticity and spatially varying selection rule: a view from genomic reaction norms in a panmictic species (Anguilla rostrata)

(2014) Caroline L Côté et al.   BMC GENOMICS

Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica

(2014) Laura E Eierman et al.   BMC GENOMICS

Genome-wide analysis of the omega-3 fatty acid desaturase gene family in Gossypium

(2014) Olga P Yurchenko et al.   BMC PLANT BIOLOGY

Evolution of phenotypic plasticity and environmental tolerance of a labile quantitative character in a fluctuating environment

(2014) R. Lande   JOURNAL OF EVOLUTIONARY BIOLOGY

A Robust, Spatially Explicit Model for Identifying Oyster Restoration Sites: Case Studies on the Atlantic and Gulf Coasts

(2014) Todd M. Swannack et al.   JOURNAL OF SHELLFISH RESEARCH

Gene expression plasticity evolves in response to colonization of freshwater lakes in threespine stickleback

(2014) Matthew R. J. Morris et al.   MOLECULAR ECOLOGY

Comparative population genomics in animals uncovers the determinants of genetic diversity

(2014) J. Romiguier et al.   NATURE

Yeast Growth Plasticity Is Regulated by Environment-Specific Multi-QTL Interactions

(2014) Aatish Bhatia et al.   G3-Genes Genomes Genetics

RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species

(2013) Steve Smith et al.   BMC GENOMICS

FUNCTIONAL GENOMICS OF ADAPTATION TO HYPOXIC COLD-STRESS IN HIGH-ALTITUDE DEER MICE: TRANSCRIPTOMIC PLASTICITY AND THERMOGENIC PERFORMANCE

(2013) Zachary A. Cheviron et al.   EVOLUTION

Survival of oyster larvae in different salinities depends on source population within an estuary

(2013) L.E. Eierman et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Transcriptome Analysis Reveals a Rich Gene Set Related to Innate Immunity in the Eastern Oyster (Crassostrea virginica)

(2013) Linlin Zhang et al.   MARINE BIOTECHNOLOGY

Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening

(2013) Song Luhua et al.   PHYSIOLOGIA PLANTARUM

Genome and Transcriptome Analyses Provide Insight into the Euryhaline Adaptation Mechanism of Crassostrea gigas

(2013) Jie Meng et al.   PLoS One

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A heuristic model on the role of plasticity in adaptive evolution: plasticity increases adaptation, population viability and genetic variation

(2013) I. Gomez-Mestre et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The genetics of phenotypic plasticity. XII. Temporal and spatial heterogeneity

(2013) Samuel M. Scheiner   Ecology and Evolution

Journal of Heredity Adopts Joint Data Archiving Policy

(2012) C. S. Baker   JOURNAL OF HEREDITY

Effective population sizes of eastern oyster Crassostrea virginica (Gmelin) populations in Delaware Bay, USA

(2012) Yan He et al.   JOURNAL OF MARINE RESEARCH

Modeling the dispersal of eastern oyster (Crassostrea virginica) larvae in Delaware Bay

(2012) Diego A. Narváez et al.   JOURNAL OF MARINE RESEARCH

Long-term patterns of an estuarine pathogen along a salinity gradient

(2012) David Bushek et al.   JOURNAL OF MARINE RESEARCH

Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs

(2012) MARIUS ROESTI et al.   MOLECULAR ECOLOGY

The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis

(2012) Pierre De Wit et al.   Molecular Ecology Resources

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Match and mismatch: conservation physiology, nutritional ecology and the timescales of biological adaptation

(2012) D. Raubenheimer et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Defining the limits of physiological plasticity: how gene expression can assess and predict the consequences of ocean change

(2012) T. G. Evans et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transcriptomic Responses to Salinity Stress in the Pacific Oyster Crassostrea gigas

(2012) Xuelin Zhao et al.   PLoS One

Linking the Spatial Scale of Environmental Variation and the Evolution of Phenotypic Plasticity: Selection Favors Adaptive Plasticity in Fine-Grained Environments

(2011) Brooke S. Baythavong   AMERICAN NATURALIST

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Comparing phenotypic effects and molecular correlates of developmental, gradual and rapid cold acclimation responses inDrosophila melanogaster

(2011) Hervé Colinet et al.   FUNCTIONAL ECOLOGY

The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions

(2011) ROBERT W. CHAPMAN et al.   MOLECULAR ECOLOGY

Mass mortality in Pacific oysters is associated with a specific gene expression signature

(2011) MAXINE L. CHANEY et al.   MOLECULAR ECOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Controlling gene expression in response to stress

(2011) Eulàlia de Nadal et al.   NATURE REVIEWS GENETICS

Living in the Now: Physiological Mechanisms to Tolerate a Rapidly Changing Environment

(2010) Gretchen E. Hofmann et al.   Annual Review of Physiology

Interacting Effects of Phenotypic Plasticity and Evolution on Population Persistence in a Changing Climate

(2010) THOMAS E. REED et al.   CONSERVATION BIOLOGY

Linking optimization and ecological models in a decision support tool for oyster restoration and management

(2010) E. W. North et al.   ECOLOGICAL APPLICATIONS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Effect of pH on Gene Expression and Thermal Tolerance of Early Life History Stages of Red Abalone (Haliotis rufescens)

(2010) MacKenzie L. Zippay et al.   JOURNAL OF SHELLFISH RESEARCH

Plant phenotypic plasticity in a changing climate

(2010) A.B. Nicotra et al.   TRENDS IN PLANT SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Frayed at the edges: selective pressure and adaptive response to abiotic stressors are mismatched in low diversity edge populations

(2009) Gareth A. Pearson et al.   JOURNAL OF ECOLOGY

Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation

(2009) R. LANDE   JOURNAL OF EVOLUTIONARY BIOLOGY

Eco-evolutionary dynamics

(2009) F. Pelletier et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Comparison of the Salinity Structure of the Chesapeake Bay, the Delaware Bay and Long Island Sound Using a Linearly Tapered Advection-Dispersion Model

(2008) Peter Gay et al.   Estuaries and Coasts

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Modifying effects of phenotypic plasticity on interactions among natural selection, adaptation and gene flow

(2008) E. CRISPO   JOURNAL OF EVOLUTIONARY BIOLOGY

Turning a hobby into a job: How duplicated genes find new functions

(2008) Gavin C. Conant et al.   NATURE REVIEWS GENETICS

Human influences on rates of phenotypic change in wild animal populations

(2007) ANDREW P. HENDRY et al.   MOLECULAR ECOLOGY