Unified Alignment of Protein-Protein Interaction Networks

ModuleAlign: module-based global alignment of protein–protein interaction networks

(2016) Somaye Hashemifar et al.   BIOINFORMATICS

Global Alignment of Protein-Protein Interaction Networks: A Survey

(2016) Ahed Elmsallati et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Fifty years of graph matching, network alignment and network comparison

(2016) Frank Emmert-Streib et al.   INFORMATION SCIENCES

Network analytics in the age of big data

(2016) N. Pr ulj et al.   SCIENCE

A global genetic interaction network maps a wiring diagram of cellular function

(2016) M. Costanzo et al.   SCIENCE

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(2016)   BIOESSAYS

Fuse: multiple network alignment via data fusion

(2015) Vladimir Gligorijević et al.   BIOINFORMATICS

Topology-function conservation in protein–protein interaction networks

(2015) Darren Davis et al.   BIOINFORMATICS

A multiobjective memetic algorithm for PPI network alignment

(2015) Connor Clark et al.   BIOINFORMATICS

MAGNA++: Maximizing Accuracy in Global Network Alignment via both node and edge conservation

(2015) V. Vijayan et al.   BIOINFORMATICS

L-GRAAL: Lagrangian graphlet-based network aligner

(2015) Noël Malod-Dognin et al.   BIOINFORMATICS

DualAligner : a dual alignment-based strategy to align protein interaction networks

(2014) Boon-Siew Seah et al.   BIOINFORMATICS

LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks

(2014) Jialu Hu et al.   BIOINFORMATICS

HubAlign: an accurate and efficient method for global alignment of protein–protein interaction networks

(2014) Somaye Hashemifar et al.   BIOINFORMATICS

MAGNA: Maximizing Accuracy in Global Network Alignment

(2014) Vikram Saraph et al.   BIOINFORMATICS

A comparison of algorithms for the pairwise alignment of biological networks

(2014) Connor Clark et al.   BIOINFORMATICS

Integration of molecular network data reconstructs Gene Ontology

(2014) Vladimir Gligorijević et al.   BIOINFORMATICS

The mammalian-membrane two-hybrid assay (MaMTH) for probing membrane-protein interactions in human cells

(2014) Julia Petschnigg et al.   NATURE METHODS

Optimizing a global alignment of protein interaction networks

(2013) Leonid Chindelevitch et al.   BIOINFORMATICS

SPINAL: scalable protein interaction network alignment

(2013) Ahmet E. Aladağ et al.   BIOINFORMATICS

NETAL: a new graph-based method for global alignment of protein–protein interaction networks

(2013) Behnam Neyshabur et al.   BIOINFORMATICS

High-resolution network biology: connecting sequence with function

(2013) Colm J. Ryan et al.   NATURE REVIEWS GENETICS

Discovering disease-disease associations by fusing systems-level molecular data

(2013) Marinka Žitnik et al.   Scientific Reports

Simple Topological Features Reflect Dynamics and Modularity in Protein Interaction Networks

(2013) Yuri Pritykin et al.   PLoS Computational Biology

Global network alignment using multiscale spectral signatures

(2012) R. Patro et al.   BIOINFORMATICS

C-GRAAL: Common-neighbors-based global GRAph ALignment of biological networks

(2012) Vesna Memišević et al.   Integrative Biology

Analyzing Protein–Protein Interaction Networks

(2012) Gavin C. K. W. Koh et al.   JOURNAL OF PROTEOME RESEARCH

A gene ontology inferred from molecular networks

(2012) Janusz Dutkowski et al.   NATURE BIOTECHNOLOGY

Co-clustering phenome–genome for phenotype classification and disease gene discovery

(2012) TaeHyun Hwang et al.   NUCLEIC ACIDS RESEARCH

The BioGRID interaction database: 2013 update

(2012) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

AlignNemo: A Local Network Alignment Method to Integrate Homology and Topology

(2012) Giovanni Ciriello et al.   PLoS One

Integrative network alignment reveals large regions of global network similarity in yeast and human

(2011) Oleksii Kuchaiev et al.   BIOINFORMATICS

Topological network alignment uncovers biological function and phylogeny

(2010) O. Kuchaiev et al.   Journal of the Royal Society Interface

Global alignment of protein-protein interaction networks by graph matching methods

(2009) M. Zaslavskiy et al.   BIOINFORMATICS

How Perfect Can Protein Interactomes Be?

(2009) E. D. Levy et al.   Science Signaling

Protein-protein interaction networks and biology—what's the connection?

(2008) Luke Hakes et al.   NATURE BIOTECHNOLOGY