HubAlign: an accurate and efficient method for global alignment of protein–protein interaction networks

Optimizing a global alignment of protein interaction networks

(2013) Leonid Chindelevitch et al.   BIOINFORMATICS

NETAL: a new graph-based method for global alignment of protein–protein interaction networks

(2013) Behnam Neyshabur et al.   BIOINFORMATICS

Global network alignment using multiscale spectral signatures

(2012) R. Patro et al.   BIOINFORMATICS

AlignNemo: A Local Network Alignment Method to Integrate Homology and Topology

(2012) Giovanni Ciriello et al.   PLoS One

Seed selection strategy in global network alignment without destroying the entire structures of functional modules

(2012) Bingbo Wang et al.   Proteome Science

Integrative network alignment reveals large regions of global network similarity in yeast and human

(2011) Oleksii Kuchaiev et al.   BIOINFORMATICS

Effective graph resistance

(2011) W. Ellens et al.   LINEAR ALGEBRA AND ITS APPLICATIONS

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

Topological network alignment uncovers biological function and phylogeny

(2010) O. Kuchaiev et al.   Journal of the Royal Society Interface

IsoRankN: spectral methods for global alignment of multiple protein networks

(2009) C.-S. Liao et al.   BIOINFORMATICS

Treewidth computations I. Upper bounds

(2009) Hans L. Bodlaender et al.   INFORMATION AND COMPUTATION

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

The Modular Organization of Protein Interactions in Escherichia coli

(2009) José M. Peregrín-Alvarez et al.   PLoS Computational Biology

Global alignment of multiple protein interaction networks with application to functional orthology detection

(2008) R. Singh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An integrated approach to inferring gene-disease associations in humans

(2008) Predrag Radivojac et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality

(2008) Elena Zotenko et al.   PLoS Computational Biology