The female gametophyte: an emerging model for cell type-specific systems biology in plant development
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
The female gametophyte: an emerging model for cell type-specific systems biology in plant development
Authors
Keywords
-
Journal
Frontiers in Plant Science
Volume 6, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2015-11-03
DOI
10.3389/fpls.2015.00907
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Library construction for next-generation sequencing: Overviews and challenges
- (2016) Steven R. Head et al. BIOTECHNIQUES
- Plant germline formation: common concepts and developmental flexibility in sexual and asexual reproduction
- (2015) A. Schmidt et al. DEVELOPMENT
- Crop Epigenomics: Identifying, Unlocking, and Harnessing Cryptic Variation in Crop Genomes
- (2015) Lexiang Ji et al. Molecular Plant
- FRAP, FLIM, and FRET: Detection and analysis of cellular dynamics on a molecular scale using fluorescence microscopy
- (2015) Carla De Los Santos et al. MOLECULAR REPRODUCTION AND DEVELOPMENT
- RNA Sequencing of Laser-Capture Microdissected Compartments of the Maize Kernel Identifies Regulatory Modules Associated with Endosperm Cell Differentiation
- (2015) Junpeng Zhan et al. PLANT CELL
- Rcount: simple and flexible RNA-Seq read counting
- (2014) M. W. Schmid et al. BIOINFORMATICS
- The transcriptome landscape of early maize meiosis
- (2014) Stefanie Dukowic-Schulze et al. BMC PLANT BIOLOGY
- Data integration in the era of omics: current and future challenges
- (2014) David Gomez-Cabrero et al. BMC Systems Biology
- Cell type-specific transcriptome analysis in the early Arabidopsis thaliana embryo
- (2014) D. Slane et al. DEVELOPMENT
- Yeast Systems Biology: Our Best Shot at Modeling a Cell
- (2014) C. Boone GENETICS
- New insights into the structural and spatial variability of cell-wall polysaccharides during wheat grain development, as revealed through MALDI mass spectrometry imaging
- (2014) Dušan Veličković et al. JOURNAL OF EXPERIMENTAL BOTANY
- Maize germinal cell initials accommodate hypoxia and precociously express meiotic genes
- (2014) Timothy Kelliher et al. PLANT JOURNAL
- Plant systems biology: insights, advances and challenges
- (2014) Bhavisha P. Sheth et al. PLANTA
- Highly Multiplexed Subcellular RNA Sequencing in Situ
- (2014) J. H. Lee et al. SCIENCE
- Apomictic and Sexual Germline Development Differ with Respect to Cell Cycle, Transcriptional, Hormonal and Epigenetic Regulation
- (2014) Anja Schmidt et al. PLoS Genetics
- Integrated network analysis and effective tools in plant systems biology
- (2014) Atsushi Fukushima et al. Frontiers in Plant Science
- Structural and developmental variability in the female gametophyte of Griffithella hookeriana, Polypleurum stylosum, and Zeylanidium lichenoides and its bearing on the occurrence of single fertilization in Podostemaceae
- (2014) Anita Sehgal et al. Plant Reproduction
- Current advances in systems and integrative biology
- (2014) Scott W. Robinson et al. Computational and Structural Biotechnology Journal
- Next-Generation Sequencing Platforms
- (2013) Elaine R. Mardis Annual Review of Analytical Chemistry
- Microgenomics: Genome-Scale, Cell-Specific Monitoring of Multiple Gene Regulation Tiers
- (2013) J. Bailey-Serres Annual Review of Plant Biology
- Theoretical and experimental evidence indicates that there is no detectable auxin gradient in the angiosperm female gametophyte
- (2013) D. S. Lituiev et al. DEVELOPMENT
- Cell-Type-Specific Profiling of Gene Expression and Chromatin Binding without Cell Isolation: Assaying RNA Pol II Occupancy in Neural Stem Cells
- (2013) Tony D. Southall et al. DEVELOPMENTAL CELL
- Cell-specific Analysis of the Tomato Pollen Proteome from Pollen Mother Cell to Mature Pollen Provides Evidence for Developmental Priming
- (2013) Palak Chaturvedi et al. JOURNAL OF PROTEOME RESEARCH
- Comparative Proteomic Analysis of Generative and Sperm Cells Reveals Molecular Characteristics Associated with Sperm Development and Function Specialization
- (2013) Xin Zhao et al. JOURNAL OF PROTEOME RESEARCH
- Comprehensive Cell-specific Protein Analysis in Early and Late Pollen Development from Diploid Microsporocytes to Pollen Tube Growth
- (2013) Till Ischebeck et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantitative single-cell RNA-seq with unique molecular identifiers
- (2013) Saiful Islam et al. NATURE METHODS
- Genomic and epigenetic insights into the molecular bases of heterosis
- (2013) Z. Jeffrey Chen NATURE REVIEWS GENETICS
- Systematic identification of transcriptional regulatory modules from protein–protein interaction networks
- (2013) Diego Diez et al. NUCLEIC ACIDS RESEARCH
- Transcriptomes of isolatedOryza sativagametes characterized by deep sequencing: evidence for distinct sex-dependent chromatin and epigenetic states before fertilization
- (2013) Sarah N. Anderson et al. PLANT JOURNAL
- Enlarging Cells Initiating Apomixis in Hieracium praealtum Transition to an Embryo Sac Program prior to Entering Mitosis
- (2013) T. Okada et al. PLANT PHYSIOLOGY
- Identification of Proteins Enriched in Rice Egg or Sperm Cells by Single-Cell Proteomics
- (2013) Mafumi Abiko et al. PLoS One
- High-resolution metabolic mapping of cell types in plant roots
- (2013) A. Moussaieff et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transcriptomics approaches in the early Arabidopsis embryo
- (2013) Joakim Palovaara et al. TRENDS IN PLANT SCIENCE
- CAST-ChIP Maps Cell-Type-Specific Chromatin States in the Drosophila Central Nervous System
- (2013) Tamás Schauer et al. Cell Reports
- Unleashing the potential of the root hair cell as a single plant cell type model in root systems biology
- (2013) Zhenzhen Qiao et al. Frontiers in Plant Science
- Interactome Mapping: Using Protein Microarray Technology to Reconstruct Diverse Protein Networks
- (2013) Ijeoma Uzoma et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Early Embryogenesis in Flowering Plants: Setting Up the Basic Body Pattern
- (2012) Steffen Lau et al. Annual Review of Plant Biology
- Quantitative Imaging with Fluorescent Biosensors
- (2012) Sakiko Okumoto et al. Annual Review of Plant Biology
- Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana
- (2012) Wanhui You et al. BMC PLANT BIOLOGY
- DNA Methylation Dynamics during Sexual Reproduction in Arabidopsis thaliana
- (2012) Pauline E. Jullien et al. CURRENT BIOLOGY
- Integrative systems biology: an attempt to describe a simple weed
- (2012) Louisa M Liberman et al. CURRENT OPINION IN PLANT BIOLOGY
- Cell-specific expression profiling of rare cell types as exemplified by its impact on our understanding of female gametophyte development
- (2012) Samuel E Wuest et al. CURRENT OPINION IN PLANT BIOLOGY
- Somatic small RNA pathways promote the mitotic events of megagametogenesis during female reproductive development in Arabidopsis
- (2012) M. R. Tucker et al. DEVELOPMENT
- Identification of a DNA methylation-independent imprinting control region at the Arabidopsis MEDEA locus
- (2012) H. J. P. Wohrmann et al. GENES & DEVELOPMENT
- Single-cell-type Proteomics: Toward a Holistic Understanding of Plant Function
- (2012) Shaojun Dai et al. MOLECULAR & CELLULAR PROTEOMICS
- Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging
- (2012) Fumihito Miura et al. NUCLEIC ACIDS RESEARCH
- Spatial Mapping of Lipids at Cellular Resolution in Embryos of Cotton
- (2012) P. J. Horn et al. PLANT CELL
- Quantitative imaging using genetically encoded sensors for small molecules in plants
- (2012) Sakiko Okumoto PLANT JOURNAL
- Analysis of plant germline development by high-throughput RNA profiling: technical advances and new insights
- (2012) Anja Schmidt et al. PLANT JOURNAL
- Cell type-specific transcriptional profiling: implications for metabolite profiling
- (2012) Eric D. Rogers et al. PLANT JOURNAL
- Use of mass spectrometry for imaging metabolites in plants
- (2012) Young Jin Lee et al. PLANT JOURNAL
- High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions
- (2012) Stephan Kueger et al. PLANT JOURNAL
- The pollen tube: a soft shell with a hard core
- (2012) Hannes Vogler et al. PLANT JOURNAL
- Glandular trichomes: what comes after expressed sequence tags?
- (2012) Alain Tissier PLANT JOURNAL
- A Powerful Method for Transcriptional Profiling of Specific Cell Types in Eukaryotes: Laser-Assisted Microdissection and RNA Sequencing
- (2012) Marc W. Schmid et al. PLoS One
- The protein expression landscape of the Arabidopsis root
- (2012) J. J. Petricka et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Using Cell-to-Cell Variability--A New Era in Molecular Biology
- (2012) L. Pelkmans SCIENCE
- Hypoxia Triggers Meiotic Fate Acquisition in Maize
- (2012) T. Kelliher et al. SCIENCE
- Uncovering Arabidopsis Membrane Protein Interactome Enriched in Transporters Using Mating-Based Split Ubiquitin Assays and Classification Models
- (2012) Jin Chen et al. Frontiers in Plant Science
- Protein microarrays for systems biology
- (2011) L. Yang et al. ACTA BIOCHIMICA ET BIOPHYSICA SINICA
- The Epigenome and Plant Development
- (2011) Guangming He et al. Annual Review of Plant Biology
- Fifteen years of large scale metabolic modeling of yeast: Developments and impacts
- (2011) Tobias Österlund et al. BIOTECHNOLOGY ADVANCES
- Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes
- (2011) Changbin Chen et al. BMC PLANT BIOLOGY
- Novel biological insights revealed from cell type-specific expression profiling
- (2011) Mallorie Taylor-Teeples et al. CURRENT OPINION IN PLANT BIOLOGY
- Direct targets of the D. melanogaster DSXF protein and the evolution of sexual development
- (2011) S. D. Luo et al. DEVELOPMENT
- Conservation and divergence of DNA methylation in eukaryotes
- (2011) Zhixi Su et al. Epigenetics
- Yeast: An Experimental Organism for 21st Century Biology
- (2011) David Botstein et al. GENETICS
- Conserved and Unique Features of the Maize (Zea maysL.) Root Hair Proteome
- (2011) Josefine Nestler et al. JOURNAL OF PROTEOME RESEARCH
- Green systems biology — From single genomes, proteomes and metabolomes to ecosystems research and biotechnology
- (2011) Wolfram Weckwerth Journal of Proteomics
- Gene expression profiling of Arabidopsis meiocytes
- (2011) P. Libeau et al. PLANT BIOLOGY
- Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor
- (2011) M. Groszmann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MALDI-imaging mass spectrometry - An emerging technique in plant biology
- (2011) Stephanie Kaspar et al. PROTEOMICS
- Nuclear behavior, cell polarity, and cell specification in the female gametophyte
- (2011) Stefanie Sprunck et al. SEXUAL PLANT REPRODUCTION
- Transcriptome Analysis of the Arabidopsis Megaspore Mother Cell Uncovers the Importance of RNA Helicases for Plant Germline Development
- (2011) Anja Schmidt et al. PLOS BIOLOGY
- A Decade of Systems Biology
- (2010) Han-Yu Chuang et al. Annual Review of Cell and Developmental Biology
- Female Gametophyte Development in Flowering Plants
- (2010) Wei-Cai Yang et al. Annual Review of Plant Biology
- Quantitation in Mass-Spectrometry-Based Proteomics
- (2010) Waltraud X. Schulze et al. Annual Review of Plant Biology
- Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa
- (2010) Li Q Wei et al. BMC GENOMICS
- Arabidopsis Female Gametophyte Gene Expression Map Reveals Similarities between Plant and Animal Gametes
- (2010) Samuel E. Wuest et al. CURRENT BIOLOGY
- The INTACT method for cell type–specific gene expression and chromatin profiling in Arabidopsis thaliana
- (2010) Roger B Deal et al. Nature Protocols
- The transcriptome landscape of Arabidopsis male meiocytes from high-throughput sequencing: the complexity and evolution of the meiotic process
- (2010) Hongxing Yang et al. PLANT JOURNAL
- Global Gene Profiling of Laser-Captured Pollen Mother Cells Indicates Molecular Pathways and Gene Subfamilies Involved in Rice Meiosis
- (2010) X. Tang et al. PLANT PHYSIOLOGY
- Studies of a Biochemical Factory: Tomato Trichome Deep Expressed Sequence Tag Sequencing and Proteomics
- (2010) A. L. Schilmiller et al. PLANT PHYSIOLOGY
- Soybean Metabolites Regulated in Root Hairs in Response to the Symbiotic Bacterium Bradyrhizobium japonicum
- (2010) L. Brechenmacher et al. PLANT PHYSIOLOGY
- Distinct Gene Expression Profiles in Egg and Synergid Cells of Rice as Revealed by Cell Type-Specific Microarrays
- (2010) T. Ohnishi et al. PLANT PHYSIOLOGY
- Gel-based and gel-free proteomic analysis of Nicotiana tabacum trichomes identifies proteins involved in secondary metabolism and in the (a)biotic stress response
- (2010) Emmanuel Van Cutsem et al. PROTEOMICS
- The Genetic Landscape of a Cell
- (2010) M. Costanzo et al. SCIENCE
- Male gametogenesis and germline specification in flowering plants
- (2010) David Twell SEXUAL PLANT REPRODUCTION
- Root hair systems biology
- (2010) Marc Libault et al. TRENDS IN PLANT SCIENCE
- H3K27me3 Profiling of the Endosperm Implies Exclusion of Polycomb Group Protein Targeting by DNA Methylation
- (2010) Isabelle Weinhofer et al. PLoS Genetics
- Plant Protein-Protein Interaction Network and Interactome
- (2009) Yixiang Zhang et al. CURRENT GENOMICS
- Integrated omics approaches in plant systems biology
- (2009) Atsushi Fukushima et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function
- (2009) M. A. Grobei et al. GENOME RESEARCH
- Defensin-like polypeptide LUREs are pollen tube attractants secreted from synergid cells
- (2009) Satohiro Okuda et al. NATURE
- Gene expression in the dimorphic sperm cells ofPlumbago zeylanica: transcript profiling, diversity, and relationship to cell type
- (2009) Xiaoping Gou et al. PLANT JOURNAL
- Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
- (2009) M. Libault et al. PLANT PHYSIOLOGY
- VirtualPlant: A Software Platform to Support Systems Biology Research
- (2009) M. S. Katari et al. PLANT PHYSIOLOGY
- TrichOME: A Comparative Omics Database for Plant Trichomes
- (2009) X. Dai et al. PLANT PHYSIOLOGY
- Comparative systems biology across an evolutionary gradient within the Shewanella genus
- (2009) K. T. Konstantinidis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reconstructing the ancestral female gametophyte of angiosperms: Insights from Amborella and other ancient lineages of flowering plants
- (2008) William E. Friedman et al. AMERICAN JOURNAL OF BOTANY
- A Genetic Regulatory Network in the Development of Trichomes and Root Hairs
- (2008) Tetsuya Ishida et al. Annual Review of Plant Biology
- A Dynamic Reciprocal RBR-PRC2 Regulatory Circuit Controls Arabidopsis Gametophyte Development
- (2008) Amal J. Johnston et al. CURRENT BIOLOGY
- Orbitrap mass spectrometry: Instrumentation, ion motion and applications
- (2008) Richard H. Perry et al. MASS SPECTROMETRY REVIEWS
- Functional Differentiation ofBrassica napusGuard Cells and Mesophyll Cells Revealed by Comparative Proteomics
- (2008) Mengmeng Zhu et al. MOLECULAR & CELLULAR PROTEOMICS
- Comparative Transcriptomics of Arabidopsis Sperm Cells
- (2008) F. Borges et al. PLANT PHYSIOLOGY
- Establishment of a Protein Reference Map for Soybean Root Hair Cells
- (2008) L. Brechenmacher et al. PLANT PHYSIOLOGY
- Plant systems biology comes of age
- (2008) Joshua S. Yuan et al. TRENDS IN PLANT SCIENCE
- The Development of Protein Microarrays and Their Applications in DNA–Protein and Protein–Protein Interaction Analyses of Arabidopsis Transcription Factors
- (2007) Wei Gong et al. Molecular Plant
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started