Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways
Authors
Keywords
Data visualization, Metabolites, Web-based applications, Genome analysis, Genomic databases, Gene mapping, Enzymes, Protein metabolism
Journal
PLoS Computational Biology
Volume 11, Issue 8, Pages e1004321
Publisher
Public Library of Science (PLoS)
Online
2015-08-28
DOI
10.1371/journal.pcbi.1004321
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Next-generation genome-scale models for metabolic engineering
- (2015) Zachary A King et al. CURRENT OPINION IN BIOTECHNOLOGY
- PathVisio 3: An Extendable Pathway Analysis Toolbox
- (2015) Martina Kutmon et al. PLoS Computational Biology
- Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale
- (2014) Joanne K Liu et al. BMC Systems Biology
- Minimal metabolic pathway structure is consistent with associated biomolecular interactions
- (2014) A. Bordbar et al. Molecular Systems Biology
- Constraint-based models predict metabolic and associated cellular functions
- (2014) Aarash Bordbar et al. NATURE REVIEWS GENETICS
- Biographer: web-based editing and rendering of SBGN compliant biochemical networks
- (2013) F. Krause et al. BIOINFORMATICS
- A model-driven quantitative metabolomics analysis of aerobic and anaerobic metabolism inE. coliK-12 MG1655 that is biochemically and thermodynamically consistent
- (2013) Douglas McCloskey et al. BIOTECHNOLOGY AND BIOENGINEERING
- COBRApy: COnstraints-Based Reconstruction and Analysis for Python
- (2013) Ali Ebrahim et al. BMC Systems Biology
- Omix - A Visualization Tool for Metabolic Networks with Highest Usability and Customizability in Focus
- (2013) Peter Droste et al. CHEMIE INGENIEUR TECHNIK
- VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies
- (2013) Zhenjun Hu et al. NUCLEIC ACIDS RESEARCH
- The UCSC Genome Browser database: 2014 update
- (2013) Donna Karolchik et al. NUCLEIC ACIDS RESEARCH
- Software support for SBGN maps: SBGN-ML and LibSBGN
- (2012) M. P. van Iersel et al. BIOINFORMATICS
- VANTED v2: a framework for systems biology applications
- (2012) Hendrik Rohn et al. BMC Systems Biology
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Web-Based Metabolic Network Visualization with a Zooming User Interface
- (2011) Mario Latendresse et al. BMC BIOINFORMATICS
- D³ Data-Driven Documents
- (2011) M. Bostock et al. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS
- A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011
- (2011) J. D. Orth et al. Molecular Systems Biology
- WikiPathways: building research communities on biological pathways
- (2011) T. Kelder et al. NUCLEIC ACIDS RESEARCH
- iPath2.0: interactive pathway explorer
- (2011) Takuji Yamada et al. NUCLEIC ACIDS RESEARCH
- Editing, validating and translating of SBGN maps
- (2010) T. Czauderna et al. BIOINFORMATICS
- Cytoscape 2.8: new features for data integration and network visualization
- (2010) M. E. Smoot et al. BIOINFORMATICS
- BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
- (2010) Jan Schellenberger et al. BMC BIOINFORMATICS
- Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models
- (2010) Nathan E Lewis et al. Molecular Systems Biology
- JBrowse: A next-generation genome browser
- (2009) M. E. Skinner et al. GENOME RESEARCH
- Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API
- (2009) Nobuaki Kono et al. PLoS One
- CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks
- (2008) A. Funahashi et al. PROCEEDINGS OF THE IEEE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search