Omix - A Visualization Tool for Metabolic Networks with Highest Usability and Customizability in Focus

Combined Fluxomics and Transcriptomics Analysis of Glucose Catabolism via a Partially Cyclic Pentose Phosphate Pathway in Gluconobacter oxydans 621H

(2013) Tanja Hanke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Networks

(2012) Nils Gehlenborg et al.   NATURE METHODS

Visualizing multi-omics data in metabolic networks with the software Omix—A case study

(2011) Peter Droste et al.   BIOSYSTEMS

Semi-automatic drawing of metabolic networks

(2011) Peter Droste et al.   Information Visualization

Arcadia: a visualization tool for metabolic pathways

(2010) Alice C. Villéger et al.   BIOINFORMATICS

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Managing Chaos: Lessons Learned Developing Software in the Life Sciences

(2009) Sarah Killcoyne et al.   COMPUTING IN SCIENCE & ENGINEERING

OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis

(2009) Lake-Ee Quek et al.   Microbial Cell Factories

The Systems Biology Graphical Notation

(2009) Nicolas Le Novère et al.   NATURE BIOTECHNOLOGY

Large-scale computation of elementary flux modes with bit pattern trees

(2008) Marco Terzer et al.   BIOINFORMATICS

anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data

(2008) Nicola Zamboni et al.   BMC BIOINFORMATICS

A survey of visualization tools for biological network analysis

(2008) Georgios A Pavlopoulos et al.   BioData Mining