Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale

Minimal metabolic pathway structure is consistent with associated biomolecular interactions

(2014) A. Bordbar et al.   Molecular Systems Biology

Constraint-based models predict metabolic and associated cellular functions

(2014) Aarash Bordbar et al.   NATURE REVIEWS GENETICS

Genome-Scale Modeling of the Protein Secretory Machinery in Yeast

(2013) Amir Feizi et al.   PLoS One

Reconstruction of protein networks from an atlas of maize seed proteotypes

(2013) J. W. Walley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Whole-Cell Computational Model Predicts Phenotype from Genotype

(2012) Jonathan R. Karr et al.   CELL

Kinetics of Precursor Interactions with the Bacterial Tat Translocase Detected by Real-time FRET

(2012) Neal Whitaker et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

In silico method for modelling metabolism and gene product expression at genome scale

(2012) Joshua A. Lerman et al.   Nature Communications

Development of a high-throughput screening assay for the discovery of small-molecule SecA inhibitors

(2011) Kenneth Segers et al.   ANALYTICAL BIOCHEMISTRY

Assembly of Bacterial Inner Membrane Proteins

(2011) Ross E. Dalbey et al.   Annual Review of Biochemistry

The ReconstitutedEscherichia coliBam Complex Catalyzes Multiple Rounds of β-Barrel Assembly

(2011) Christine L. Hagan et al.   BIOCHEMISTRY

Economics of membrane occupancy and respiro-fermentation

(2011) K. Zhuang et al.   Molecular Systems Biology

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011

(2011) J. D. Orth et al.   Molecular Systems Biology

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

(2010) Jan Schellenberger et al.   BMC BIOINFORMATICS

Multiple precursor proteins bind individual Tat receptor complexes and are collectively transported

(2010) Xianyue Ma et al.   EMBO JOURNAL

Microbial metalloproteomes are largely uncharacterized

(2010) Aleksandar Cvetkovic et al.   NATURE

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Interdependence of Cell Growth and Gene Expression: Origins and Consequences

(2010) M. Scott et al.   SCIENCE

The Lateral Gate of SecYEG Opens during Protein Translocation

(2009) David J. F. du Plessis et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural analysis of substrate binding by the TatBC component of the twin-arginine protein transport system

(2009) M. J. Tarry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization

(2009) Ines Thiele et al.   PLoS Computational Biology

EchoLOCATION: an in silico analysis of the subcellular locations of Escherichia coli proteins and comparison with experimentally derived locations

(2008) Richard S. P. Horler et al.   BIOINFORMATICS