A model-driven quantitative metabolomics analysis of aerobic and anaerobic metabolism inE. coliK-12 MG1655 that is biochemically and thermodynamically consistent

Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli

(2013) D. McCloskey et al.   Molecular Systems Biology

Metabolic regulation analysis of wild-type and arcA mutant Escherichia coli under nitrate conditions using different levels of omics data

(2012) Yoshihiro Toya et al.   Molecular BioSystems

Network Context and Selection in the Evolution to Enzyme Specificity

(2012) H. Nam et al.   SCIENCE

Transcript Profiling and Inference ofEscherichia coliK-12 ArcA Activity across the Range of Physiologically Relevant Oxygen Concentrations

(2011) Matthew D. Rolfe et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Escherichia coli responds with a rapid and large change in growth rate upon a shift from glucose-limited to glucose-excess conditions

(2011) Hilal Taymaz-Nikerel et al.   METABOLIC ENGINEERING

The alternative aerobic ribonucleotide reductase of Escherichia coli, NrdEF, is a manganese-dependent enzyme that enables cell replication during periods of iron starvation

(2011) Julia E. Martin et al.   MOLECULAR MICROBIOLOGY

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011

(2011) J. D. Orth et al.   Molecular Systems Biology

Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals

(2011) Clementina Dellomonaco et al.   NATURE

Condition-Dependent Cell Volume and Concentration of Escherichia coli to Facilitate Data Conversion for Systems Biology Modeling

(2011) Benjamin Volkmer et al.   PLoS One

Reprogramming of Escherichia coli K-12 Metabolism during the Initial Phase of Transition from an Anaerobic to a Micro-Aerobic Environment

(2011) Eleanor W. Trotter et al.   PLoS One

Ultrahigh Performance Liquid Chromatography−Tandem Mass Spectrometry Method for Fast and Robust Quantification of Anionic and Aromatic Metabolites

(2010) Joerg Martin Buescher et al.   ANALYTICAL CHEMISTRY

Metabolomic Analysis via Reversed-Phase Ion-Pairing Liquid Chromatography Coupled to a Stand Alone Orbitrap Mass Spectrometer

(2010) Wenyun Lu et al.   ANALYTICAL CHEMISTRY

Regulation of Aerobic-to-Anaerobic Transitions by the FNR Cycle in Escherichia coli

(2010) Dean A. Tolla et al.   JOURNAL OF MOLECULAR BIOLOGY

Synergy between 13C-metabolic flux analysis and flux balance analysis for understanding metabolic adaption to anaerobiosis in E. coli

(2010) Xuewen Chen et al.   METABOLIC ENGINEERING

The soxRS response of Escherichia coli can be induced in the absence of oxidative stress and oxygen by modulation of NADPH content

(2010) A. R. Krapp et al.   MICROBIOLOGY-SGM

Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models

(2010) Nathan E Lewis et al.   Molecular Systems Biology

Cross-Platform Comparison of Methods for Quantitative Metabolomics of Primary Metabolism

(2009) Jörg Martin Büscher et al.   ANALYTICAL CHEMISTRY

Metabolic Fluxes during Strong Carbon Catabolite Repression by Malate inBacillus subtilis

(2009) Roelco J. Kleijn et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Development and application of a differential method for reliable metabolome analysis in Escherichia coli

(2008) Hilal Taymaz-Nikerel et al.   ANALYTICAL BIOCHEMISTRY

Global Metabolic Profiling ofEscherichia coliCultures:  an Evaluation of Methods for Quenching and Extraction of Intracellular Metabolites

(2008) Catherine L. Winder et al.   ANALYTICAL CHEMISTRY

Cellular Defenses against Superoxide and Hydrogen Peroxide

(2008) James A. Imlay   Annual Review of Biochemistry

anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data

(2008) Nicola Zamboni et al.   BMC BIOINFORMATICS

Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach

(2008) Bryson D Bennett et al.   Nature Protocols

Integrated Sampling Procedure for Metabolome Analysis

(2006) Jochen Schaub et al.   BIOTECHNOLOGY PROGRESS