Identification of Novel and Conserved miRNAs from Extreme Halophyte, Oryza coarctata, a Wild Relative of Rice

Identification and analysis of novel salt responsive candidate gene based SSRs (cgSSRs) from rice (Oryza sativa L.)

(2015) Kutubuddin Ali Molla et al.   BMC PLANT BIOLOGY

High-throughput deep sequencing reveals that microRNAs play important roles in salt tolerance of euhalophyte Salicornia europaea

(2015) Juanjuan Feng et al.   BMC PLANT BIOLOGY

Genome-wide development of novel miRNA-based microsatellite markers of rice (Oryza sativa) for genotyping applications

(2015) Showkat Ahmad Ganie et al.   MOLECULAR BREEDING

Small RNA deep sequencing reveals the important role of microRNAs in the halophyteHalostachys caspica

(2015) Ruirui Yang et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide analysis of salt-responsive and novel microRNAs in Populus euphratica by deep sequencing

(2014) Jingna Si et al.   BMC GENETICS

Comparative transcriptome sequencing of tolerant rice introgression line and its parents in response to drought stress

(2014) Liyu Huang et al.   BMC GENOMICS

Identification and characterization of microRNAs related to salt stress in broccoli, using high-throughput sequencing and bioinformatics analysis

(2014) Yunhong Tian et al.   BMC PLANT BIOLOGY

Genome-wide data (ChIP-seq) enabled identification of cell wall-related and aquaporin genes as targets of tomato ASR1, a drought stress-responsive transcription factor

(2014) Martiniano M Ricardi et al.   BMC PLANT BIOLOGY

Ectopic over-expression of peroxisomal ascorbate peroxidase (SbpAPX) gene confers salt stress tolerance in transgenic peanut (Arachis hypogaea)

(2014) Natwar Singh et al.   GENE

The isolation and identification of salt-responsive novel microRNAs from Salicornia brachiata, an extreme halophyte

(2014) Dinkar Singh et al.   Plant Biotechnology Reports

MicroRNAs involving in cold, wounding and salt stresses in Triticum aestivum L.

(2014) Bing Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Identification of Novel and Conserved MicroRNAs Related to Drought Stress in Potato by Deep Sequencing

(2014) Ning Zhang et al.   PLoS One

Sulfate transporters in the plant’s response to drought and salinity: regulation and possible functions

(2014) Karine Gallardo et al.   Frontiers in Plant Science

Flowering time control in ornamental gloxinia (Sinningia speciosa) by manipulation of miR159 expression

(2013) Xiaoyan Li et al.   ANNALS OF BOTANY

Genome-wide identification of Thellungiella salsuginea microRNAs with putative roles in the salt stress response

(2013) Quan Zhang et al.   BMC PLANT BIOLOGY

Identification and characterization of salt responsive miRNA-SSR markers in rice (Oryza sativa)

(2013) Tapan Kumar Mondal et al.   GENE

Differentially expressed myo-inositol monophosphatase gene (CaIMP) in chickpea (Cicer arietinum L.) encodes a lithium-sensitive phosphatase enzyme with broad substrate specificity and improves seed germination and seedling growth under abiotic stresses

(2013) Saurabh C. Saxena et al.   JOURNAL OF EXPERIMENTAL BOTANY

High-throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress

(2013) Fuliang Xie et al.   PLANT BIOTECHNOLOGY JOURNAL

Genomic resources for breeding crops with enhanced abiotic stress tolerance

(2013) Kailash C. Bansal et al.   PLANT BREEDING

5′ Regulatory region of ubiquitin 2 gene from Porteresia coarctata makes efficient promoters for transgene expression in monocots and dicots

(2013) Anna Philip et al.   PLANT CELL REPORTS

High-Throughput Sequencing of Small RNA Transcriptome Reveals Salt Stress Regulated MicroRNAs in Sugarcane

(2013) Mariana Carnavale Bottino et al.   PLoS One

Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing

(2013) Runxuan Zhang et al.   PLoS One

Identification and Functional Analysis of Flowering Related microRNAs in Common Wild Rice (Oryza rufipogon Griff.)

(2013) Zongxiang Chen et al.   PLoS One

Arabidopsis KEA2, a homolog of bacterial KefC, encodes a K+/H+ antiporter with a chloroplast transit peptide

(2012) María Nieves Aranda-Sicilia et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Identification and characterization of salt-responsive microRNAs in Populus tomentosa by high-throughput sequencing

(2012) Yuanyuan Ren et al.   BIOCHIMIE

Identification and Characterization of MicroRNAs from Barley (Hordeum vulgare L.) by High-Throughput Sequencing

(2012) Shuzuo Lv et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Computational Identification of MicroRNAs in Strawberry Expressed Sequence Tags and Validation of Their Precise Sequences by miR-RACE

(2012) Qing-Hua Dong et al.   JOURNAL OF HEREDITY

The ubiquitin-proteasome system: central modifier of plant signalling

(2012) Ari Sadanandom et al.   NEW PHYTOLOGIST

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

UBIQUITIN-SPECIFIC PROTEASE16 Modulates Salt Tolerance in Arabidopsis by Regulating Na+/H+ Antiport Activity and Serine Hydroxymethyltransferase Stability

(2012) H. Zhou et al.   PLANT CELL

QTL Analysis of Na+ and K+ Concentrations in Roots and Shoots under Different Levels of NaCl Stress in Rice (Oryza sativa L.)

(2012) Zhoufei Wang et al.   PLoS One

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Evolution of MIR159/319 microRNA genes and their post-transcriptional regulatory link to siRNA pathways

(2011) Yang Li et al.   BMC EVOLUTIONARY BIOLOGY

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica

(2011) Bosheng Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

A potential role for intragenic miRNAs on their hosts' interactome

(2010) Ludwig Hinske et al.   BMC GENOMICS

Regulation of flowering time and floral patterning by miR172

(2010) Qian-Hao Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

osa-MIR393: a salinity- and alkaline stress-related microRNA gene

(2010) Peng Gao et al.   MOLECULAR BIOLOGY REPORTS

Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)

(2010) Tian Li et al.   NUCLEIC ACIDS RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Identification and organization of chloroplastic and cytosolic l-myo-inositol 1-phosphate synthase coding gene(s) in Oryza sativa: comparison with the wild halophytic rice, Porteresia coarctata

(2010) Sudipta Ray et al.   PLANTA

Over-expression of osa-MIR396c decreases salt and alkali stress tolerance

(2010) Peng Gao et al.   PLANTA

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor

(2009) Botao Zhao et al.   BMC MOLECULAR BIOLOGY

Differentially expressed membrane transporters in rice roots may contribute to cultivar dependent salt tolerance

(2009) Prasad Senadheera et al.   JOURNAL OF EXPERIMENTAL BOTANY

Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis

(2009) Naoki Yokotani et al.   PLANTA

Differential expression of miRNAs in response to salt stress in maize roots

(2008) Dong Ding et al.   ANNALS OF BOTANY

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains

(2008) Q.-H. Zhu et al.   GENOME RESEARCH

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Salinity tolerance in halophytes*

(2008) Timothy J. Flowers et al.   NEW PHYTOLOGIST

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice

(2008) Qiuyun Wang et al.   PLANT MOLECULAR BIOLOGY

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)

(2008) C. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

(2007) Markus Hafner et al.   METHODS