Comparative transcriptome sequencing of tolerant rice introgression line and its parents in response to drought stress

RNA-Seq Analysis of Allele-Specific Expression, Hybrid Effects, and Regulatory Divergence in Hybrids Compared with Their Parents from Natural Populations

(2013) Graeme D.M. Bell et al.   Genome Biology and Evolution

Structure, Function and Networks of Transcription Factors Involved in Abiotic Stress Responses

(2013) Søren Lindemose et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The role of gibberellin signalling in plant responses to abiotic stress

(2013) E. H. Colebrook et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Sensing the environment: key roles of membrane-localized kinases in plant perception and response to abiotic stress

(2013) Yuriko Osakabe et al.   JOURNAL OF EXPERIMENTAL BOTANY

Effects of Depletion of Glutathione on Abscisic Acid- and Methyl Jasmonate-Induced Stomatal Closure inArabidopsis thaliana

(2012) Nasima AKTER et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice

(2012) Jun You et al.   JOURNAL OF EXPERIMENTAL BOTANY

Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks

(2012) J. Krasensky et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative Transcriptome Profiling of Chilling Stress Responsiveness in Two Contrasting Rice Genotypes

(2012) Ting Zhang et al.   PLoS One

Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice

(2011) Di Wang et al.   BMC GENOMICS

Comparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stress

(2011) Ali Moumeni et al.   BMC PLANT BIOLOGY

Hormone balance and abiotic stress tolerance in crop plants

(2011) Zvi Peleg et al.   CURRENT OPINION IN PLANT BIOLOGY

Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs

(2011) Padubidri V Shivaprasad et al.   EMBO JOURNAL

Characterization of JAZ-interacting bHLH transcription factors that regulate jasmonate responses in Arabidopsis

(2011) Yajie Niu et al.   JOURNAL OF EXPERIMENTAL BOTANY

WRKY transcription factors: key components in abscisic acid signalling

(2011) Deena L. Rushton et al.   PLANT BIOTECHNOLOGY JOURNAL

Coping with Stresses: Roles of Calcium- and Calcium/Calmodulin-Regulated Gene Expression

(2011) Anireddy S.N. Reddy et al.   PLANT CELL

High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions

(2011) Camila Caldana et al.   PLANT JOURNAL

Response to photoxidative stress induced by cold in japonica rice is genotype dependent

(2011) Victoria Bonnecarrère et al.   PLANT SCIENCE

Genome-wide gene responses in a transgenic rice line carrying the maize resistance gene Rxo1 to the rice bacterial streak pathogen, Xanthomonas oryzae pv. oryzicola

(2010) Yong-Li Zhou et al.   BMC GENOMICS

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

(2010) Kil-Young Yun et al.   BMC PLANT BIOLOGY

Toward understanding genetic mechanisms of complex traits in rice

(2010) Wei Hao et al.   Journal of Genetics and Genomics

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Molecular and Physiological Analysis of Drought Stress in Arabidopsis Reveals Early Responses Leading to Acclimation in Plant Growth

(2010) A. Harb et al.   PLANT PHYSIOLOGY

Gene Expression Profiles Deciphering Rice Phenotypic Variation between Nipponbare (Japonica) and 93-11 (Indica) during Oxidative Stress

(2010) Fengxia Liu et al.   PLoS One

Overexpression of osmotin gene confers tolerance to salt and drought stresses in transgenic tomato (Solanum lycopersicum L.)

(2010) D. Goel et al.   PROTOPLASMA

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Global patterns of gene expression in rice cultivars undergoing a susceptible or resistant interaction with the parasitic plantStriga hermonthica

(2008) P. J. Swarbrick et al.   NEW PHYTOLOGIST

Expression profiling of rice cultivars differing in their tolerance to long-term drought stress

(2008) Thomas Degenkolbe et al.   PLANT MOLECULAR BIOLOGY

Whole genome transcriptome polymorphisms in Arabidopsis thaliana

(2008) Xu Zhang et al.   GENOME BIOLOGY