Genome-wide development of novel miRNA-based microsatellite markers of rice (Oryza sativa) for genotyping applications

Developmentally regulated expression and complex processing of barley pri-microRNAs

(2013) Katarzyna Kruszka et al.   BMC GENOMICS

Identification and characterization of salt responsive miRNA-SSR markers in rice (Oryza sativa)

(2013) Tapan Kumar Mondal et al.   GENE

Genome-Wide Analysis Reveals Diversity of Rice Intronic miRNAs in Sequence Structure, Biogenesis and Function

(2013) Yong-ao Tong et al.   PLoS One

ShortStack: Comprehensive annotation and quantification of small RNA genes

(2013) M. J. Axtell   RNA

Comparative Analysis of MicroRNA Promoters in Arabidopsis and Rice

(2013) Xin Zhao et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Identification of an miRNA candidate reflects the possible significance of transcribed microsatellites in the hairpin precursors of black pepper

(2012) Nisha Joy et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Origins and Evolution of MicroRNA Genes in Plant Species

(2012) Masafumi Nozawa et al.   Genome Biology and Evolution

Development and application of a set of breeder-friendly SNP markers for genetic analyses and molecular breeding of rice (Oryza sativa L.)

(2011) Haodong Chen et al.   THEORETICAL AND APPLIED GENETICS

Comprehensive Analysis of Simple Sequence Repeats in Pre-miRNAs

(2010) Ming Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs

(2009) Bogna Szarzynska et al.   NUCLEIC ACIDS RESEARCH

PMRD: plant microRNA database

(2009) Zhenhai Zhang et al.   NUCLEIC ACIDS RESEARCH

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

(2009) K. L. McNally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The expanding world of small RNAs

(2008) Helge Großhans et al.   NATURE

Genome level analysis of rice mRNA 3′-end processing signals and alternative polyadenylation

(2008) Yingjia Shen et al.   NUCLEIC ACIDS RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and cross-taxa utility

(2008) Adam Heesacker et al.   THEORETICAL AND APPLIED GENETICS