The potential for manipulating RNA with pentatricopeptide repeat proteins
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Title
The potential for manipulating RNA with pentatricopeptide repeat proteins
Authors
Keywords
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Journal
PLANT JOURNAL
Volume 78, Issue 5, Pages 772-782
Publisher
Wiley
Online
2013-11-07
DOI
10.1111/tpj.12377
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Note: Only part of the references are listed.- Classification and Comparison of Small RNAs from Plants
- (2013) Michael J. Axtell Annual Review of Plant Biology
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- (2013) Mareike Schallenberg-Rüdinger et al. RNA Biology
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- (2013) Jean Colcombet et al. RNA Biology
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- (2013) Yusuke Yagi et al. RNA Biology
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- (2013) Jennifer Dahan et al. RNA Biology
- RNA-Guided Human Genome Engineering via Cas9
- (2013) P. Mali et al. SCIENCE
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- (2013) L. Cong et al. SCIENCE
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- (2013) Nancy Podevin et al. TRENDS IN BIOTECHNOLOGY
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- (2013) Anthony Gobert et al. Nature Communications
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- (2012) Pablo Perez-Pinera et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Modular recognition of nucleic acids by PUF, TALE and PPR proteins
- (2012) Aleksandra Filipovska et al. Molecular BioSystems
- Mechanistic Insight into Pentatricopeptide Repeat Proteins as Sequence-Specific RNA-Binding Proteins for Organellar RNAs in Plants
- (2012) T. Nakamura et al. PLANT AND CELL PHYSIOLOGY
- Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing
- (2012) M. J. Howard et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing
- (2012) S. Bentolila et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants
- (2012) M. Takenaka et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Alternative splicing in plants – coming of age
- (2012) Naeem H. Syed et al. TRENDS IN PLANT SCIENCE
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- (2012) Rajarshi Choudhury et al. Nature Communications
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- (2011) Shuyun Dong et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A universal code for RNA recognition by PUF proteins
- (2011) Aleksandra Filipovska et al. Nature Chemical Biology
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- (2011) Beverly L. Davidson et al. NATURE REVIEWS GENETICS
- The evolution of RNA editing and pentatricopeptide repeat genes
- (2011) Sota Fujii et al. NEW PHYTOLOGIST
- Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts
- (2011) Petya Zhelyazkova et al. NUCLEIC ACIDS RESEARCH
- Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?
- (2011) Hannes Ruwe et al. NUCLEIC ACIDS RESEARCH
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- (2011) Tomas Cermak et al. NUCLEIC ACIDS RESEARCH
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- (2011) Lakshminarayan M. Iyer et al. NUCLEIC ACIDS RESEARCH
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- (2011) P. Maliga et al. PLANT PHYSIOLOGY
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- (2011) S. Fujii et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Targeted translational regulation using the PUF protein family scaffold
- (2011) A. Cooke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Stacking interactions in PUF-RNA complexes
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- (2010) Merita Murtola et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
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- (2010) Anne-Laure Chateigner-Boutin et al. RNA Biology
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- (2009) Katrien Van Der Kelen et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
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- Pentatricopeptide repeat proteins: a socket set for organelle gene expression
- (2008) C SCHMITZLINNEWEBER et al. TRENDS IN PLANT SCIENCE
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