PPR-SMRs

A Rapid Ribosome Profiling Method Elucidates Chloroplast Ribosome Behavior in Vivo

(2013) R. Zoschke et al.   PLANT CELL

A model for tetrapyrrole synthesis as the primary mechanism for plastid-to-nucleus signaling during chloroplast biogenesis

(2013) Matthew J. Terry et al.   Frontiers in Plant Science

Mutation of the pentatricopeptide repeat-SMR protein SVR7 impairs accumulation and translation of chloroplast ATP synthase subunits in Arabidopsis thaliana

(2012) Reimo Zoschke et al.   JOURNAL OF PLANT RESEARCH

Construction of Plastid Reference Proteomes for Maize and Arabidopsis and Evaluation of Their Orthologous Relationships; The Concept of Orthoproteomics

(2012) Mingshu Huang et al.   JOURNAL OF PROTEOME RESEARCH

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit

(2012) Katja Baerenfaller et al.   Molecular Systems Biology

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

(2012) Sandra K. Tanz et al.   NUCLEIC ACIDS RESEARCH

The Core of Chloroplast Nucleoids Contains Architectural SWIB Domain Proteins

(2012) J. Melonek et al.   PLANT CELL

The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplastatpB/EmRNA

(2012) Reimo Zoschke et al.   PLANT JOURNAL

Nucleotide and RNA Metabolism Prime Translational Initiation in the Earliest Events of Mitochondrial Biogenesis during Arabidopsis Germination

(2012) S. R. Law et al.   PLANT PHYSIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins

(2012) Alice Barkan et al.   PLoS Genetics

Retrograde signaling in plants: from simple to complex scenarios

(2012) Dario Leister   Frontiers in Plant Science

Do Red and Green Make Brown?: Perspectives on Plastid Acquisitions within Chromalveolates

(2011) Richard G. Dorrell et al.   EUKARYOTIC CELL

Ubiquitination of mRNA cycling sequence binding protein fromLeishmania donovani(LdCSBP) modulates the RNA endonuclease activity of its Smr domain

(2011) Dipankar Bhandari et al.   FEBS LETTERS

Crystal structure of YdaL, a stand-alone small MutS-related protein from Escherichia coli

(2011) Wen-Jun Gui et al.   JOURNAL OF STRUCTURAL BIOLOGY

The evolution of RNA editing and pentatricopeptide repeat genes

(2011) Sota Fujii et al.   NEW PHYTOLOGIST

Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?

(2011) Hannes Ruwe et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Nucleoid-Enriched Proteomes in Developing Plastids and Chloroplasts from Maize Leaves: A New Conceptual Framework for Nucleoid Functions

(2011) W. Majeran et al.   PLANT PHYSIOLOGY

In-Depth Temporal Transcriptome Profiling Reveals a Crucial Developmental Switch with Roles for RNA Processing and Organelle Metabolism That Are Essential for Germination in Arabidopsis

(2011) R. Narsai et al.   PLANT PHYSIOLOGY

Molecular Foundations of Reproductive Lethality in Arabidopsis thaliana

(2011) Rosanna Muralla et al.   PLoS One

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

(2011) Daniel L. Ayres et al.   SYSTEMATIC BIOLOGY

AT_CHLORO, a Comprehensive Chloroplast Proteome Database with Subplastidial Localization and Curated Information on Envelope Proteins

(2010) Myriam Ferro et al.   MOLECULAR & CELLULAR PROTEOMICS

Megadalton Complexes in the Chloroplast Stroma ofArabidopsis thalianaCharacterized by Size Exclusion Chromatography, Mass Spectrometry, and Hierarchical Clustering

(2010) Paul Dominic B. Olinares et al.   MOLECULAR & CELLULAR PROTEOMICS

Conservation and diversity of MutS proteins

(2010) Paweł Sachadyn   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

An Arabidopsis Pentatricopeptide Repeat Protein, SUPPRESSOR OF VARIEGATION7, Is Required for FtsH-Mediated Chloroplast Biogenesis

(2010) X. Liu et al.   PLANT PHYSIOLOGY

Reconstruction of Metabolic Pathways, Protein Expression, and Homeostasis Machineries across Maize Bundle Sheath and Mesophyll Chloroplasts: Large-Scale Quantitative Proteomics Using the First Maize Genome Assembly

(2010) G. Friso et al.   PLANT PHYSIOLOGY

Plastidial retrograde signalling – a true “plastid factor” or just metabolite signatures?

(2010) Thomas Pfannschmidt   TRENDS IN PLANT SCIENCE

Analysis of the Legionella longbeachae Genome and Transcriptome Uncovers Unique Strategies to Cause Legionnaires' Disease

(2010) Christel Cazalet et al.   PLoS Genetics

DOG 1.0: illustrator of protein domain structures

(2009) Jian Ren et al.   CELL RESEARCH

Subunits of the Plastid ClpPR Protease Complex Have Differential Contributions to Embryogenesis, Plastid Biogenesis, and Plant Development in Arabidopsis

(2009) J. Kim et al.   PLANT CELL

Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms

(2009) A. Moustafa et al.   SCIENCE

Solution Structure and Characterization of the DNA-Binding Activity of the B3BP–Smr Domain

(2008) Tammo Diercks et al.   JOURNAL OF MOLECULAR BIOLOGY

On the Expansion of the Pentatricopeptide Repeat Gene Family in Plants

(2008) N. O'Toole et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

CLB19, a pentatricopeptide repeat protein required for editing ofrpoAandclpPchloroplast transcripts

(2008) Anne-Laure Chateigner-Boutin et al.   PLANT JOURNAL

Sorting Signals, N-Terminal Modifications and Abundance of the Chloroplast Proteome

(2008) Boris Zybailov et al.   PLoS One

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

(2008) C SCHMITZLINNEWEBER et al.   TRENDS IN PLANT SCIENCE