Helminth.net: expansions to Nematode.net and an introduction to Trematode.net

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Genome of the human hookworm Necator americanus

(2014) Yat T Tang et al.   NATURE GENETICS

Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction

(2014) Bernardo J Foth et al.   NATURE GENETICS

Identification and characterization of alternative splicing in parasitic nematode transcriptomes

(2014) Sahar Abubucker et al.   Parasites & Vectors

The Opisthorchis viverrini genome provides insights into life in the bile duct

(2014) Neil D. Young et al.   Nature Communications

Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota

(2014) Soo Ching Lee et al.   PLoS Neglected Tropical Diseases

Using GBrowse 2.0 to visualize and share next-generation sequence data

(2013) L. D. Stein   BRIEFINGS IN BIOINFORMATICS

Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome

(2013) Jordan L. Plieskatt et al.   FASEB JOURNAL

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

WormBase 2014: new views of curated biology

(2013) Todd W. Harris et al.   NUCLEIC ACIDS RESEARCH

DrugBank 4.0: shedding new light on drug metabolism

(2013) Vivian Law et al.   NUCLEIC ACIDS RESEARCH

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2013) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

The ChEMBL bioactivity database: an update

(2013) A. Patrícia Bento et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Patent Human Infections with the Whipworm, Trichuris trichiura, Are Not Associated with Alterations in the Faecal Microbiota

(2013) Philip Cooper et al.   PLoS One

Using Existing Drugs as Leads for Broad Spectrum Anthelmintics Targeting Protein Kinases

(2013) Christina M. Taylor et al.   PLoS Pathogens

Discovery of Anthelmintic Drug Targets and Drugs Using Chokepoints in Nematode Metabolic Pathways

(2013) Christina M. Taylor et al.   PLoS Pathogens

EFICAz2.5: application of a high-precision enzyme function predictor to 396 proteomes

(2012) Narendra Kumar et al.   BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

UPLC-MS metabolic profiling of second trimester amniotic fluid and maternal urine and comparison with NMR spectral profiling for the identification of pregnancy disorder biomarkers

(2012) Gonçalo Graça et al.   Molecular BioSystems

Whole-genome sequence of Schistosoma haematobium

(2012) Neil D Young et al.   NATURE GENETICS

The RCSB Protein Data Bank: new resources for research and education

(2012) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

Gene Ontology Annotations and Resources

(2012)   NUCLEIC ACIDS RESEARCH

A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni

(2012) Anna V. Protasio et al.   PLoS Neglected Tropical Diseases

NEMBASE4: The nematode transcriptome resource

(2011) Benjamin Elsworth et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings

(2011) Ferhat Ay et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data

(2011) J. Martin et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

HelmCoP: An Online Resource for Helminth Functional Genomics and Drug and Vaccine Targets Prioritization

(2011) Sahar Abubucker et al.   PLoS One

The NIH-NIAID Filariasis Research Reagent Resource Center

(2011) Michelle L. Michalski et al.   PLoS Neglected Tropical Diseases

DETECT—a Density Estimation Tool for Enzyme ClassificaTion and its application to Plasmodium falciparum

(2010) Stacy S. Hung et al.   BIOINFORMATICS

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor

(2009) Jitao David Zhang et al.   BIOINFORMATICS

Food-Borne Trematodiases

(2009) J. Keiser et al.   CLINICAL MICROBIOLOGY REVIEWS

Helminth Genomics: The Implications for Human Health

(2009) Paul J. Brindley et al.   PLoS Neglected Tropical Diseases

NemaPath: online exploration of KEGG-based metabolic pathways for nematodes

(2008) Todd Wylie et al.   BMC GENOMICS

Helminth infections: the great neglected tropical diseases

(2008) Peter J. Hotez et al.   JOURNAL OF CLINICAL INVESTIGATION