Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome

Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome

(2013) Corinne Ferrier Maurice et al.   CELL

Host-Derived Nitrate Boosts Growth of E. coli in the Inflamed Gut

(2013) S. E. Winter et al.   SCIENCE

Advances in cholangiocyte immunobiology

(2012) Gaurav Syal et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Classification, Diagnosis, and Management of Cholangiocarcinoma

(2012) Nataliya Razumilava et al.   Clinical Gastroenterology and Hepatology

Helminth Infections and Host Immune Regulation

(2012) H. J. McSorley et al.   CLINICAL MICROBIOLOGY REVIEWS

Analysis of 16S rRNA and mxaF genes reveling insights into Methylobacterium niche-specific plant association

(2012) Manuella Nóbrega Dourado et al.   GENETICS AND MOLECULAR BIOLOGY

Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases

(2012) Henri Duboc et al.   GUT

Chronic inflammation, immune escape, and oncogenesis in the liver: A unique neighborhood for novel intersections

(2012) Jimmy K. Stauffer et al.   HEPATOLOGY

The dynamic biliary epithelia: Molecules, pathways, and disease

(2012) Steven P. O’Hara et al.   JOURNAL OF HEPATOLOGY

Global burden of cancers attributable to infections in 2008: a review and synthetic analysis

(2012) Catherine de Martel et al.   LANCET ONCOLOGY

The worm returns

(2012) Joel V. Weinstock   NATURE

Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10 −/− mice

(2012) Suzanne Devkota et al.   NATURE

Genomic variation landscape of the human gut microbiome

(2012) Siegfried Schloissnig et al.   NATURE

Succession in the Gut Microbiome following Antibiotic and Antibody Therapies for Clostridium difficile

(2012) Gregory L. Peterfreund et al.   PLoS One

The tumorigenic liver fluke Opisthorchis viverrini – multiple pathways to cancer

(2012) Banchob Sripa et al.   TRENDS IN PARASITOLOGY

Helicobacter pylori in Thai patients with cholangiocarcinoma and its association with biliary inflammation and proliferation

(2012) Wongwarut Boonyanugomol et al.   HPB

Elevated Plasma IL-6 Associates with Increased Risk of Advanced Fibrosis and Cholangiocarcinoma in Individuals Infected by Opisthorchis viverrini

(2012) Banchob Sripa et al.   PLoS Neglected Tropical Diseases

Therapeutic Helminth Infection of Macaques with Idiopathic Chronic Diarrhea Alters the Inflammatory Signature and Mucosal Microbiota of the Colon

(2012) Mara Jana Broadhurst et al.   PLoS Pathogens

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing

(2011) Samuel V Angiuoli et al.   BMC BIOINFORMATICS

Metagenomics and Personalized Medicine

(2011) Herbert W. Virgin et al.   CELL

The role of gut microbiota (commensal bacteria) and the mucosal barrier in the pathogenesis of inflammatory and autoimmune diseases and cancer: contribution of germ-free and gnotobiotic animal models of human diseases

(2011) Helena Tlaskalová-Hogenová et al.   Cellular & Molecular Immunology

Serratia Infections: from Military Experiments to Current Practice

(2011) S. D. Mahlen   CLINICAL MICROBIOLOGY REVIEWS

Hygiene Hypothesis and Autoimmune Diseases

(2011) Graham A. W. Rook   CLINICAL REVIEWS IN ALLERGY & IMMUNOLOGY

Bile Acid Is a Host Factor That Regulates the Composition of the Cecal Microbiota in Rats

(2011) K.B.M. Saiful Islam et al.   GASTROENTEROLOGY

Cholangiocyte N-Ras Protein Mediates Lipopolysaccharide-induced Interleukin 6 Secretion and Proliferation

(2011) Steven P. O'Hara et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Infective endocarditis

(2011) Yok-Ai Que et al.   Nature Reviews Cardiology

Clinical diagnosis and staging of cholangiocarcinoma

(2011) Boris Blechacz et al.   Nature Reviews Gastroenterology & Hepatology

Comparative histopathology of Opisthorchis felineus and Opisthorchis viverrini in a hamster model: An implication of high pathogenicity of the European liver fluke

(2011) Maria N. Lvova et al.   PARASITOLOGY INTERNATIONAL

The current status of opisthorchiasis and clonorchiasis in the Mekong Basin

(2011) Paiboon Sithithaworn et al.   PARASITOLOGY INTERNATIONAL

Ultrasonography assessment of hepatobiliary abnormalities in 3359 subjects with Opisthorchis viverrini infection in endemic areas of Thailand

(2011) Eimorn Mairiang et al.   PARASITOLOGY INTERNATIONAL

Comparative studies on animal models for Opisthorchis viverrini infection: host interaction through susceptibility and pathology

(2011) Orasa Wonkchalee et al.   PARASITOLOGY RESEARCH

Evolution of Th2 Immunity: A Rapid Repair Response to Tissue Destructive Pathogens

(2011) Judith E. Allen et al.   PLoS Pathogens

A Family of Helminth Molecules that Modulate Innate Cell Responses via Molecular Mimicry of Host Antimicrobial Peptides

(2011) Mark W. Robinson et al.   PLoS Pathogens

MethanogenicArchaeaand oral infections – ways to unravel the black box

(2011) Hans-Peter Horz et al.   Journal of Oral Microbiology

Opisthorchiasis and Opisthorchis-associated cholangiocarcinoma in Thailand and Laos

(2010) Banchob Sripa et al.   ACTA TROPICA

Iron-Oxidizing Bacteria: An Environmental and Genomic Perspective

(2010) David Emerson et al.   Annual Review of Microbiology

Helicobacter pylori and Gastric Cancer: Factors That Modulate Disease Risk

(2010) L. E. Wroblewski et al.   CLINICAL MICROBIOLOGY REVIEWS

Intracellular Oceanospirillales bacteria inhabit gills of Acesta bivalves

(2010) Sigmund Jensen et al.   FEMS MICROBIOLOGY ECOLOGY

Cholangiocarcinoma: Descriptive epidemiology and risk factors

(2010) C. de Martel et al.   GASTROENTEROLOGIE CLINIQUE ET BIOLOGIQUE

Alteration of the murine gut microbiota during infection with the parasitic helminth Heligmosomoides polygyrus

(2010) Seth T. Walk et al.   INFLAMMATORY BOWEL DISEASES

Sphingomonas paucimobilis: a persistent Gram-negative nosocomial infectious organism

(2010) M.P. Ryan et al.   JOURNAL OF HOSPITAL INFECTION

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Exploitation of the Intestinal Microflora by the Parasitic Nematode Trichuris muris

(2010) K. S. Hayes et al.   SCIENCE

Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome

(2010) Carlos W Nossa   WORLD JOURNAL OF GASTROENTEROLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

(2009) M. Hamady et al.   GENOME RESEARCH

Advanced periductal fibrosis from infection with the carcinogenic human liver fluke Opisthorchis viverrini correlates with elevated levels of interleukin-6

(2009) Banchob Sripa et al.   HEPATOLOGY

A review of human carcinogens—Part B: biological agents

(2009) Véronique Bouvard et al.   LANCET ONCOLOGY

Changes in Gut Microbiota Control Metabolic Endotoxemia-Induced Inflammation in High-Fat Diet-Induced Obesity and Diabetes in Mice

(2008) P. D. Cani et al.   DIABETES

Role of Toll-like receptors in gastrointestinal malignancies

(2008) M Fukata et al.   ONCOGENE

Diagnosis and initial management of cholangiocarcinoma with obstructive jaundice

(2008) Takashi Tajiri et al.   WORLD JOURNAL OF GASTROENTEROLOGY