PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs

Activities at the Universal Protein Resource (UniProt)

(2014)   NUCLEIC ACIDS RESEARCH

APoc: large-scale identification of similar protein pockets

(2013) Mu Gao et al.   BIOINFORMATICS

MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, Cα only models, Alternative alignments, and Non-sequential alignments

(2013) Shintaro Minami et al.   BMC BIOINFORMATICS

JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied toProteopedia

(2013) Robert M. Hanson et al.   ISRAEL JOURNAL OF CHEMISTRY

SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures

(2013) Naomi K. Fox et al.   NUCLEIC ACIDS RESEARCH

The ChEMBL bioactivity database: an update

(2013) A. Patrícia Bento et al.   NUCLEIC ACIDS RESEARCH

ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteins

(2012) J. Konc et al.   NUCLEIC ACIDS RESEARCH

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

(2012) Ian Sillitoe et al.   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: new resources for research and education

(2012) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

Gene Ontology Annotations and Resources

(2012)   NUCLEIC ACIDS RESEARCH

Comprehensive analysis of kinase inhibitor selectivity

(2011) Mindy I Davis et al.   NATURE BIOTECHNOLOGY

PoSSuM: a database of similar protein-ligand binding and putative pockets

(2011) J.-I. Ito et al.   NUCLEIC ACIDS RESEARCH

TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

(2011) Yi-An Chen et al.   PLoS One

PDB-scale analysis of known and putative ligand-binding sites with structural sketches

(2011) Jun-Ichi Ito et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Alignment-Free Ultra-High-Throughput Comparison of Druggable Protein−Ligand Binding Sites

(2010) Nathanaël Weill et al.   Journal of Chemical Information and Modeling

Fast screening of protein surfaces using geometric invariant fingerprints

(2009) S. Yin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detection of multiscale pockets on protein surfaces using mathematical morphology

(2009) Takeshi Kawabata   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Comprehensive Structural Classification of Ligand-Binding Motifs in Proteins

(2009) Akira R. Kinjo et al.   STRUCTURE

Method for comparing the structures of protein ligand-binding sites and application for predicting protein-drug interactions

(2008) Ryoichi Minai et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS