MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, Cα only models, Alternative alignments, and Non-sequential alignments

A novel method to compare protein structures using local descriptors

(2011) Paweł Daniluk et al.   BMC BIOINFORMATICS

How significant is a protein structure similarity with TM-score = 0.5?

(2010) Jinrui Xu et al.   BIOINFORMATICS

Accuracy analysis of multiple structure alignments

(2009) Christoph Berbalk et al.   PROTEIN SCIENCE

Circular permuted proteins in the universe of protein folds

(2009) Tobias Schmidt-Goenner et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Comprehensive Structural Classification of Ligand-Binding Motifs in Proteins

(2009) Akira R. Kinjo et al.   STRUCTURE

Discrimination between Distant Homologs and Structural Analogs: Lessons from Manually Constructed, Reliable Data Sets

(2008) Hua Cheng et al.   JOURNAL OF MOLECULAR BIOLOGY

PROMALS3D: a tool for multiple protein sequence and structure alignments

(2008) Jimin Pei et al.   NUCLEIC ACIDS RESEARCH

Novel protein folds and their nonsequential structural analogs

(2008) Aysam Guerler et al.   PROTEIN SCIENCE