ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteins

Structural Modeling and Biochemical Characterization of Recombinant KPN_02809, a Zinc-Dependent Metalloprotease from Klebsiella pneumoniae MGH 78578

(2012) Mun Teng Wong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

ProBiS-Database: Precalculated Binding Site Similarities and Local Pairwise Alignments of PDB Structures

(2012) Janez Konc et al.   Journal of Chemical Information and Modeling

Rigid substructure search

(2011) D. Shirvanyants et al.   BIOINFORMATICS

Old friends in new guise: repositioning of known drugs with structural bioinformatics

(2011) V. J. Haupt et al.   BRIEFINGS IN BIOINFORMATICS

Specific CLK Inhibitors from a Novel Chemotype for Regulation of Alternative Splicing

(2011) Oleg Fedorov et al.   CHEMISTRY & BIOLOGY

Model Structures of Helicobacter pylori UreD(H) Domains: A Putative Molecular Recognition Platform

(2011) Francesco Musiani et al.   Journal of Chemical Information and Modeling

ATP-Binding Site of Bacterial Enzymes as a Target for Antibacterial Drug Design

(2011) Veronika Škedelj et al.   JOURNAL OF MEDICINAL CHEMISTRY

Human Proteome-scale Structural Modeling of E2–E3 Interactions Exploiting Interface Motifs

(2011) Gozde Kar et al.   JOURNAL OF PROTEOME RESEARCH

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures

(2011) L. Parca et al.   NUCLEIC ACIDS RESEARCH

SA-Mot: a web server for the identification of motifs of interest extracted from protein loops

(2011) Leslie Regad et al.   NUCLEIC ACIDS RESEARCH

PoSSuM: a database of similar protein-ligand binding and putative pockets

(2011) J.-I. Ito et al.   NUCLEIC ACIDS RESEARCH

DRAR-CPI: a server for identifying drug repositioning potential and adverse drug reactions via the chemical–protein interactome

(2011) Heng Luo et al.   NUCLEIC ACIDS RESEARCH

Drug Discovery Using Chemical Systems Biology: Weak Inhibition of Multiple Kinases May Contribute to the Anti-Cancer Effect of Nelfinavir

(2011) Li Xie et al.   PLoS Computational Biology

ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment

(2010) Janez Konc et al.   BIOINFORMATICS

SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison

(2010) J. Ren et al.   NUCLEIC ACIDS RESEARCH

ProBiS: a web server for detection of structurally similar protein binding sites

(2010) J. Konc et al.   NUCLEIC ACIDS RESEARCH

PROMISCUOUS: a database for network-based drug-repositioning

(2010) J. von Eichborn et al.   NUCLEIC ACIDS RESEARCH

Binding of Protein Kinase Inhibitors to Synapsin I Inferred from Pair-Wise Binding Site Similarity Measurements

(2010) Enrico De Franchi et al.   PLoS One

Kinase selectivity potential for inhibitors targeting the ATP binding site: a network analysis

(2009) Danzhi Huang et al.   BIOINFORMATICS

MolLoc: a web tool for the local structural alignment of molecular surfaces

(2009) S. Angaran et al.   NUCLEIC ACIDS RESEARCH

Exploration of Uncharted Regions of the Protein Universe

(2009) Lukasz Jaroszewski et al.   PLOS BIOLOGY

Drug Discovery Using Chemical Systems Biology: Repositioning the Safe Medicine Comtan to Treat Multi-Drug and Extensively Drug Resistant Tuberculosis

(2009) Sarah L. Kinnings et al.   PLoS Computational Biology

ATP competitive inhibitors of d-alanine–d-alanine ligase based on protein kinase inhibitor scaffolds

(2008) Gemma Triola et al.   BIOORGANIC & MEDICINAL CHEMISTRY

MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions

(2008) A. Shulman-Peleg et al.   NUCLEIC ACIDS RESEARCH