iPfam: a database of protein family and domain interactions found in the Protein Data Bank

Structural and functional studies of S-adenosyl-L-methionine binding proteins: a ligand-centric approach

(2013) Rajaram Gana et al.   BMC STRUCTURAL BIOLOGY

CREDO: a structural interactomics database for drug discovery

(2013) Adrian M. Schreyer et al.   Database-The Journal of Biological Databases and Curation

The ChEMBL database as linked open data

(2013) Egon L Willighagen et al.   Journal of Cheminformatics

Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data

(2012) Boyko Kakaradov et al.   BMC BIOINFORMATICS

Protein interactions in 3D: From interface evolution to drug discovery

(2012) Christof Winter et al.   JOURNAL OF STRUCTURAL BIOLOGY

SIFTS: Structure Integration with Function, Taxonomy and Sequences resource

(2012) Sameer Velankar et al.   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: new resources for research and education

(2012) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

Dfam: a database of repetitive DNA based on profile hidden Markov models

(2012) Travis J. Wheeler et al.   NUCLEIC ACIDS RESEARCH

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

(2012) Janna Hastings et al.   NUCLEIC ACIDS RESEARCH

Structural biology and drug discovery for protein–protein interactions

(2012) Harry Jubb et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds

(2011) Joan Teyra et al.   BMC BIOINFORMATICS

The protein interaction map of bacteriophage lambda

(2011) Seesandra V Rajagopala et al.   BMC MICROBIOLOGY

Three-dimensional modeling of protein interactions and complexes is going ‘omics

(2011) Amelie Stein et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Making your database available through Wikipedia: the pros and cons

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

A Decade of Systems Biology

(2010) Han-Yu Chuang et al.   Annual Review of Cell and Developmental Biology

The Subunit Interfaces of Weakly Associated Homodimeric Proteins

(2010) Sucharita Dey et al.   JOURNAL OF MOLECULAR BIOLOGY

DOMINE: a comprehensive collection of known and predicted domain-domain interactions

(2010) Sailu Yellaboina et al.   NUCLEIC ACIDS RESEARCH

3did: identification and classification of domain-based interactions of known three-dimensional structure

(2010) A. Stein et al.   NUCLEIC ACIDS RESEARCH

The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms

(2010) Q. Xu et al.   NUCLEIC ACIDS RESEARCH

The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures

(2010) Fred P. Davis et al.   PLoS Computational Biology

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

(2009) Pingzhao Hu et al.   PLOS BIOLOGY

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE