SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds

Structural space of protein-protein interfaces is degenerate, close to complete, and highly connected

(2010) M. Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Studies on the inference of protein binding regions across fold space based on structural similarities

(2010) Joan Teyra et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A Genome-Scale DNA Repair RNAi Screen Identifies SPG48 as a Novel Gene Associated with Hereditary Spastic Paraplegia

(2010) Mikołaj Słabicki et al.   PLOS BIOLOGY

BIPA: a database for protein–nucleic acid interaction in 3D structures

(2009) Semin Lee et al.   BIOINFORMATICS

Evolution of biomolecular networks — lessons from metabolic and protein interactions

(2009) Takuji Yamada et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Analysis of the impact of solvent on contacts prediction in proteins

(2009) Sergey A Samsonov et al.   BMC STRUCTURAL BIOLOGY

Analyzing Protein Interaction Networks Using Structural Information

(2008) Christina Kiel et al.   Annual Review of Biochemistry

GlycomeDB – integration of open-access carbohydrate structure databases

(2008) René Ranzinger et al.   BMC BIOINFORMATICS

SCOWLP classification: Structural comparison and analysis of protein binding regions

(2008) Joan Teyra et al.   BMC BIOINFORMATICS

A molecular dynamics approach to study the importance of solvent in protein interactions

(2008) Sergey Samsonov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS