Fungal endophyte infection of ryegrass reprograms host metabolism and alters development

The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses

(2015) Jonathan M. Plett et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A Core Gene Set Describes the Molecular Basis of Mutualism and Antagonism inEpichloëspp.

(2015) Carla J. Eaton et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

From root to fruit: RNA-Seq analysis shows that arbuscular mycorrhizal symbiosis may affect tomato fruit metabolism

(2014) Inès Zouari et al.   BMC GENOMICS

Nomenclatural realignment of Neotyphodium species with genus Epichloë

(2014) Adrian Leuchtmann et al.   MYCOLOGIA

Niche engineering demonstrates a latent capacity for fungal-algal mutualism

(2014) E. F. Y. Hom et al.   SCIENCE

A secreted Ustilago maydis effector promotes virulence by targeting anthocyanin biosynthesis in maize

(2014) Shigeyuki Tanaka et al.   eLife

Susceptibility of tall fescue toRhizoctonia zeaeinfection as affected by endophyte symbiosis

(2013) D. Pańka et al.   ANNALS OF APPLIED BIOLOGY

Plant hormones in arbuscular mycorrhizal symbioses: an emerging role for gibberellins

(2013) Eloise Foo et al.   ANNALS OF BOTANY

The exploitation of epichloae endophytes for agricultural benefit

(2013) Linda J. Johnson et al.   FUNGAL DIVERSITY

FORAGES AND PASTURES SYMPOSIUM: Fungal endophytes of tall fescue and perennial ryegrass: Pasture friend or foe?12

(2013) C. A. Young et al.   JOURNAL OF ANIMAL SCIENCE

Production of phenolics and the emission of volatile organic compounds by perennial ryegrass (Lolium perenne L.)/Neotyphodium lolii association as a response to infection by Fusarium poae

(2013) Dariusz Pańka et al.   JOURNAL OF PLANT PHYSIOLOGY

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

(2013) MARC LOHSE et al.   PLANT CELL AND ENVIRONMENT

Plant-Symbiotic Fungi as Chemical Engineers: Multi-Genome Analysis of the Clavicipitaceae Reveals Dynamics of Alkaloid Loci

(2013) Christopher L. Schardl et al.   PLoS Genetics

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes

(2012) Michele Perazzolli et al.   BMC GENOMICS

A new currency for mutualism? Fungal endophytes alter antioxidant activity in hosts responding to drought

(2012) Cyd E. Hamilton et al.   FUNGAL DIVERSITY

Transcriptomic response of Arabidopsis thaliana after 24h incubation with the biocontrol fungus Trichoderma harzianum

(2012) Eugenia Morán-Diez et al.   JOURNAL OF PLANT PHYSIOLOGY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

SOLiD-SAGE of Endophyte-Infected Red Fescue Reveals Numerous Effects on Host Transcriptome and an Abundance of Highly Expressed Fungal Secreted Proteins

(2012) Karen V. Ambrose et al.   PLoS One

Simultaneous RNA-Seq Analysis of a Mixed Transcriptome of Rice and Blast Fungus Interaction

(2012) Yoshihiro Kawahara et al.   PLoS One

A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development

(2011) Jonathan M. Plett et al.   CURRENT BIOLOGY

A functional genomics approach to dissect the mode of action of the Stagonospora nodorum effector protein SnToxA in wheat

(2011) DELPHINE VINCENT et al.   MOLECULAR PLANT PATHOLOGY

Metabolic priming by a secreted fungal effector

(2011) Armin Djamei et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Biotic stress globally downregulates photosynthesis genes

(2010) DAMLA D. BILGIN et al.   PLANT CELL AND ENVIRONMENT

Disruption of Signaling in a Fungal-Grass Symbiosis Leads to Pathogenesis

(2010) C. J. Eaton et al.   PLANT PHYSIOLOGY

Conserved Fungal LysM Effector Ecp6 Prevents Chitin-Triggered Immunity in Plants

(2010) R. de Jonge et al.   SCIENCE

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis

(2009) S Karen Gomez et al.   BMC PLANT BIOLOGY

Trehalose biosynthesis is involved in sporulation of Stagonospora nodorum

(2009) Rohan G.T. Lowe et al.   FUNGAL GENETICS AND BIOLOGY

Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus

(2009) Mike Guether et al.   NEW PHYTOLOGIST

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

(2009) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Effect of the endophyte Neotyphodium lolii on susceptibility and host physiological response of perennial ryegrass to fungal pathogens

(2008) Pei Tian et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis

(2008) Gunther Doehlemann et al.   PLANT JOURNAL

Neotyphodium fungal endophytes confer physiological protection to perennial ryegrass (Lolium perenne L.) subjected to a water deficit

(2007) Heike Hahn et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY