Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

Plant genome sequencing — applications for crop improvement

(2013) Marie E Bolger et al.   CURRENT OPINION IN BIOTECHNOLOGY

De novo sequencing and assembly of Centella asiatica leaf transcriptome for mapping of structural, functional and regulatory genes with special reference to secondary metabolism

(2013) Rajender S. Sangwan et al.   GENE

Next Generation Sequencing in Predicting Gene Function in Podophyllotoxin Biosynthesis

(2012) Joaquim V. Marques et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

CDD: conserved domains and protein three-dimensional structure

(2012) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Development of Transcriptomic Resources for Interrogating the Biosynthesis of Monoterpene Indole Alkaloids in Medicinal Plant Species

(2012) Elsa Góngora-Castillo et al.   PLoS One

UniProtKB amid the turmoil of plant proteomics research

(2012) Michel Schneider et al.   Frontiers in Plant Science

RNA-Seq Assembly – Are We There Yet?

(2012) Simon Schliesky et al.   Frontiers in Plant Science

Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

(2011) Satya S Narina et al.   BMC GENOMICS

Genome-scale phylogenetic function annotation of large and diverse protein families

(2011) B. E. Engelhardt et al.   GENOME RESEARCH

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

(2011) I. Pagani et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Examining the drought stress transcriptome in cotton leaf and root tissue

(2010) Paxton Payton et al.   BIOTECHNOLOGY LETTERS

Plant cell wall polymers as precursors for biofuels

(2010) Markus Pauly et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: Extending MapMan ontology for grapevine

(2009) Ana Rotter et al.   BMC PLANT BIOLOGY

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

(2009) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

The 1001 Genomes Project for Arabidopsis thaliana

(2009) Detlef Weigel et al.   GENOME BIOLOGY

Protein function prediction and annotation in an integrated environment powered by web services (AFAWE)

(2008) Anika Jöcker et al.   BIOINFORMATICS

The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program

(2008) Michel Schneider et al.   Journal of Proteomics

Barley Grain Maturation and Germination: Metabolic Pathway and Regulatory Network Commonalities and Differences Highlighted by New MapMan/PageMan Profiling Tools

(2008) N. Sreenivasulu et al.   PLANT PHYSIOLOGY