High-density SNP assay development for genetic analysis in maritime pine (Pinus pinaster)

Does phylogeographical structure relate to climatic niche divergence? A test using maritime pine (Pinus pinaster Ait.)

(2015) M. J. Serra-Varela et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Single-nucleotide polymorphism discovery and validation in high-density SNP array for genetic analysis in European white oaks

(2015) C. Lepoittevin et al.   Molecular Ecology Resources

Nucleotide polymorphisms in a pine ortholog of theArabidopsisdegrading enzyme cellulase KORRIGAN are associated with early growth performance inPinus pinaster

(2015) José Antonio Cabezas et al.   TREE PHYSIOLOGY

LPmerge: an R package for merging genetic maps by linear programming

(2014) Jeffrey B. Endelman et al.   BIOINFORMATICS

Genetic control of functional traits related to photosynthesis and water use efficiency in Pinus pinaster Ait. drought response: integration of genome annotation, allele association and QTL detection for candidate gene identification

(2014) Marina de Miguel et al.   BMC GENOMICS

Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine

(2014) Christophe Plomion et al.   BMC GENOMICS

Molecular Proxies for Climate Maladaptation in a Long-Lived Tree (Pinus pinaster Aiton, Pinaceae)

(2014) J.-P. Jaramillo-Correa et al.   GENETICS

Demystifying the RAD fad

(2014) Jonathan B. Puritz et al.   MOLECULAR ECOLOGY

Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference

(2014) A. Mastretta-Yanes et al.   Molecular Ecology Resources

Genomic selection in forest tree breeding: the concept and an outlook to the future

(2014) Fikret Isik   NEW FORESTS

High-resolution genetic maps ofEucalyptusimproveEucalyptus grandisgenome assembly

(2014) Jérôme Bartholomé et al.   NEW PHYTOLOGIST

Development of an Alfalfa SNP Array and Its Use to Evaluate Patterns of Population Structure and Linkage Disequilibrium

(2014) Xuehui Li et al.   PLoS One

A Population Genetic Signal of Polygenic Adaptation

(2014) Jeremy J. Berg et al.   PLoS Genetics

Considering evolutionary processes in adaptive forestry

(2013) François Lefèvre et al.   ANNALS OF FOREST SCIENCE

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

(2013) Emilie Chancerel et al.   BMC BIOLOGY

A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation

(2013) Glenn T Howe et al.   BMC GENOMICS

High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L

(2013) Régine Delourme et al.   BMC GENOMICS

Soil water stress affects both cuticular wax content and cuticle-related gene expression in young saplings of maritime pine (Pinus pinaster Ait)

(2013) Grégoire Le Provost et al.   BMC PLANT BIOLOGY

Development of high-density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners

(2013) Nathalie Pavy et al.   Molecular Ecology Resources

Association genetics of oleoresin flow in loblolly pine: discovering genes and predicting phenotype for improved resistance to bark beetles and bioenergy potential

(2013) Jared W. Westbrook et al.   NEW PHYTOLOGIST

In situgenetic association for serotiny, a fire-related trait, in Mediterranean maritime pine (Pinus pinaster)

(2013) Katharina B. Budde et al.   NEW PHYTOLOGIST

Limited genetic variability and phenotypic plasticity detected for cavitation resistance in a Mediterranean pine

(2013) Jean-Baptiste Lamy et al.   NEW PHYTOLOGIST

De novoassembly of maritime pine transcriptome: implications for forest breeding and biotechnology

(2013) Javier Canales et al.   PLANT BIOTECHNOLOGY JOURNAL

Molecular response to water stress in two contrasting Mediterranean pines (Pinus pinaster and Pinus pinea)

(2013) Pedro Perdiguero et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Impacts of Population Structure and Analytical Models in Genome-Wide Association Studies of Complex Traits in Forest Trees: A Case Study in Eucalyptus globulus

(2013) Eduardo P. Cappa et al.   PLoS One

Combination of multipoint maximum likelihood (MML) and regression mapping algorithms to construct a high-density genetic linkage map for loblolly pine (Pinus taeda L.)

(2013) Pedro J. Martínez-García et al.   Tree Genetics & Genomes

Nucleotide diversity and linkage disequilibrium at 58 stress response and phenology candidate genes in a European beech (Fagus sylvatica L.) population from southeastern France

(2013) H. Lalagüe et al.   Tree Genetics & Genomes

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Genetic differentiation for size at first reproduction through male versus female functions in the widespread Mediterranean tree Pinus pinaster

(2012) L. Santos-del-Blanco et al.   ANNALS OF BOTANY

A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers

(2012) Nathalie Pavy et al.   BMC BIOLOGY

Searching for resistance genes to Bursaphelenchus xylophilus using high throughput screening

(2012) Carla S Santos et al.   BMC GENOMICS

Disentangling the Roles of History and Local Selection in Shaping Clinal Variation of Allele Frequencies and Gene Expression in Norway Spruce ( Picea abies )

(2012) Jun Chen et al.   GENETICS

The effect of RAD allele dropout on the estimation of genetic variation within and between populations

(2012) Mathieu Gautier et al.   MOLECULAR ECOLOGY

Special features of RAD Sequencing data: implications for genotyping

(2012) John W. Davey et al.   MOLECULAR ECOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Association genetics of chemical wood properties in black poplar (Populus nigra)

(2012) Fernando P. Guerra et al.   NEW PHYTOLOGIST

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

(2012) Sung-Chur Sim et al.   PLoS One

Sequence variation patterns along a latitudinal cline in Scots pine (Pinus sylvestris): signs of clinal adaptation?

(2012) Sonja T. Kujala et al.   Tree Genetics & Genomes

Bayesian variable selection regression for genome-wide association studies and other large-scale problems

(2011) Yongtao Guan et al.   Annals of Applied Statistics

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

(2011) Emilie Chancerel et al.   BMC GENOMICS

Scanning the genome for gene SNPs related to climate adaptation and estimating selection at the molecular level in boreal black spruce

(2011) JULIEN PRUNIER et al.   MOLECULAR ECOLOGY

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

(2011) S. J. HELYAR et al.   Molecular Ecology Resources

Natural Variation in Arabidopsis: From Molecular Genetics to Ecological Genomics

(2011) D. Weigel   PLANT PHYSIOLOGY

Uniform Selection as a Primary Force Reducing Population Genetic Differentiation of Cavitation Resistance across a Species Range

(2011) Jean-Baptiste Lamy et al.   PLoS One

Association mapping for growth, straightness and wood chemistry traits in the Pinus pinaster Aquitaine breeding population

(2011) Camille Lepoittevin et al.   Tree Genetics & Genomes

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Progress and Promise of Genome-Wide Association Studies for Human Complex Trait Genetics

(2010) B. E. Stranger et al.   GENETICS

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular Footprints of Local Adaptation in Two Mediterranean Conifers

(2010) D. Grivet et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Strait of Gibraltar as a major biogeographic barrier in Mediterranean conifers: a comparative phylogeographic survey

(2010) J. P. JARAMILLO-CORREA et al.   MOLECULAR ECOLOGY

In Vitro vs In Silico Detected SNPs for the Development of a Genotyping Array: What Can We Learn from a Non-Model Species?

(2010) Camille Lepoittevin et al.   PLoS One

Comparative mapping in Pinus: sugar pine (Pinus lambertiana Dougl.) and loblolly pine (Pinus taeda L.)

(2010) Kathleen D. Jermstad et al.   Tree Genetics & Genomes

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Conservation genetics in transition to conservation genomics

(2010) N. Joop Ouborg et al.   TRENDS IN GENETICS

Multilocus Patterns of Nucleotide Diversity and Divergence Reveal Positive Selection at Candidate Genes Related to Cold Hardiness in Coastal Douglas Fir (Pseudotsuga menziesii var. menziesii)

(2009) A. J. Eckert et al.   GENETICS

Evaluation of algorithms used to order markers on genetic maps

(2009) M Mollinari et al.   HEREDITY

A relationship matrix including full pedigree and genomic information

(2009) A. Legarra et al.   JOURNAL OF DAIRY SCIENCE

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

(2009) Andreas Gnirke et al.   NATURE BIOTECHNOLOGY

Site frequency spectra from genomic SNP surveys

(2009) Ganeshkumar Ganapathy et al.   THEORETICAL POPULATION BIOLOGY

Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce

(2008) Nathalie Pavy et al.   BMC GENOMICS

Genomic selection: prediction of accuracy and maximisation of long term response

(2008) Mike Goddard   GENETICA

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.)

(2008) Andrew J. Eckert et al.   Tree Genetics & Genomes

Search for nucleotide diversity patterns of local adaptation in dehydrins and other cold-related candidate genes in Scots pine (Pinus sylvestris L.)

(2008) Witold Wachowiak et al.   Tree Genetics & Genomes

"Contrasting Patterns of Selection at Pinus pinaster Ait. Drought Stress Candidate Genes as Revealed by Genetic Differentiation Analyses"

(2007) E. Eveno et al.   MOLECULAR BIOLOGY AND EVOLUTION