Crop Rotation and Straw Application Impact Microbial Communities in Italian and Philippine Soils and the Rhizosphere of Zea mays

Arbuscular Mycorrhizal Fungal Association in Genetically Modified Drought-Tolerant Corn

(2017) Roxana P. Colombo et al.   JOURNAL OF ENVIRONMENTAL QUALITY

Rhizosphere priming effect: A meta-analysis

(2017) Changfu Huo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pyrenochaetopsis tabarestanensis (Cucurbitariaceae, Pleosporales), a new species isolated from rice farms in north Iran

(2017) MOSLEM PAPIZADEH et al.   Phytotaxa

Dynamic Response of Ammonia-Oxidizers to Four Fertilization Regimes across a Wheat-Rice Rotation System

(2017) Jichen Wang et al.   Frontiers in Microbiology

Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers

(2017) Ren Bai et al.   Frontiers in Microbiology

The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment

(2017) Sandra Granzow et al.   Frontiers in Microbiology

Endophytic Paecilomyces formosus LHL10 Augments Glycine max L. Adaptation to Ni-Contamination through Affecting Endogenous Phytohormones and Oxidative Stress

(2017) Saqib Bilal et al.   Frontiers in Plant Science

The Variation in the Rhizosphere Microbiome of Cotton with Soil Type, Genotype and Developmental Stage

(2017) Qinghua Qiao et al.   Scientific Reports

Previous crop and rotation history effects on maize seedling health and associated rhizosphere microbiome

(2017) Maria-Soledad Benitez et al.   Scientific Reports

The effect of soil type, rice cultivar and water management on ammonia-oxidizing archaea and bacteria populations

(2016) Gastón Azziz et al.   APPLIED SOIL ECOLOGY

Additions toSporormiaceae: Introducing Two Novel Genera,SparticolaandForliomyces, fromSpartium

(2016) Chayanard Phukhamsakda et al.   CRYPTOGAMIE MYCOLOGIE

Ecological succession reveals potential signatures of marine–terrestrial transition in salt marsh fungal communities

(2016) Francisco Dini-Andreote et al.   ISME Journal

Wheat and Rice Growth Stages and Fertilization Regimes Alter Soil Bacterial Community Structure, But Not Diversity

(2016) Jichen Wang et al.   Frontiers in Microbiology

Zonal Soil Type Determines Soil Microbial Responses to Maize Cropping and Fertilization

(2016) Mengxin Zhao et al.   mSystems

Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

(2016) S. Uroz et al.   Scientific Reports

Carbon release from rice roots under paddy rice and maize–paddy rice cropping

(2015) Yao He et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Different Bacterial Populations Associated with the Roots and Rhizosphere of Rice Incorporate Plant-Derived Carbon

(2015) Marcela Hernández et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

Thermomyces lanuginosus is the dominant fungus in maize straw composts

(2015) Lili Zhang et al.   BIORESOURCE TECHNOLOGY

Crop rotation of flooded rice with upland maize impacts the resident and active methanogenic microbial community

(2015) Björn Breidenbach et al.   ENVIRONMENTAL MICROBIOLOGY

Small but active - pool size does not matter for carbon incorporation in below-ground food webs

(2015) Johanna Pausch et al.   FUNCTIONAL ECOLOGY

High Oxygen Concentration Increases the Abundance and Activity of Bacterial Rather than Archaeal Nitrifiers in Rice Field Soil

(2015) Xiubin Ke et al.   MICROBIAL ECOLOGY

Diversity and Distribution of Aquatic Fungal Communities in the Ny-Ålesund Region, Svalbard (High Arctic)

(2015) Tao Zhang et al.   MICROBIAL ECOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage

(2015) Björn Breidenbach et al.   Frontiers in Microbiology

Land Use History Shifts In Situ Fungal and Bacterial Successions following Wheat Straw Input into the Soil

(2015) Vincent Tardy et al.   PLoS One

Differential contributions of ammonia oxidizers and nitrite oxidizers to nitrification in four paddy soils

(2014) Baozhan Wang et al.   ISME Journal

Methane and nitrous oxide emissions from rice and maize production in diversified rice cropping systems

(2014) Sebastian Weller et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

Long-term effects of mineral fertilizers on soil microorganisms – A review

(2014) Daniel Geisseler et al.   SOIL BIOLOGY & BIOCHEMISTRY

Differential responses of crop yields and soil organic carbon stock to fertilization and rice straw incorporation in three cropping systems in the subtropics

(2013) Shoulong Liu et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Community structure and abundance of ammonia-oxidizing archaea and bacteria after conversion from soybean to rice paddy in albic soils of Northeast China

(2013) Jing Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2013) Zhongtao Zhao et al.   BMC GENOMICS

Stimulation of Different Functional Groups of Bacteria by Various Plant Residues as a Driver of Soil Priming Effect

(2013) Noémie Pascault et al.   ECOSYSTEMS

Bacterial community variations in an alfalfa-rice rotation system revealed by 16S rRNA gene 454-pyrosequencing

(2013) Ana R. Lopes et al.   FEMS MICROBIOLOGY ECOLOGY

Families of Dothideomycetes

(2013) Kevin D. Hyde et al.   FUNGAL DIVERSITY

Seasonal Transition of Active Bacterial and Archaeal Communities in Relation to Water Management in Paddy Soils

(2013) Hideomi Itoh et al.   MICROBES AND ENVIRONMENTS

Pyrosequencing Reveals Contrasting Soil Bacterial Diversity and Community Structure of Two Main Winter Wheat Cropping Systems in China

(2013) Jun Zhao et al.   MICROBIAL ECOLOGY

Three new genera in Chytridiales from aquatic habitats in Argentina

(2013) Carlos G. Vélez et al.   MYCOLOGIA

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing potential microbial coupling of carbon and nitrogen cycling during decomposition of maize residue by 13C-DNA-SIP

(2013) Fenliang Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Dynamics of the bacterial community structure in the rhizosphere of a maize cultivar

(2013) Xiangzhen Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Functional and ecological consequences of saprotrophic fungus–grazer interactions

(2012) Thomas W Crowther et al.   ISME Journal

Characterization of the bacterial and archaeal communities in rice field soils subjected to long-term fertilization practices

(2012) Jae-Hyung Ahn et al.   JOURNAL OF MICROBIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Impact of incorporated fresh 13C potato tissues on the bacterial and fungal community composition of soil

(2012) Alexander V. Semenov et al.   SOIL BIOLOGY & BIOCHEMISTRY

Linking soil biodiversity and agricultural soil management

(2012) Sören Thiele-Bruhn et al.   Current Opinion in Environmental Sustainability

Methanogenic Pathway and Archaeal Communities in Three Different Anoxic Soils Amended with Rice Straw and Maize Straw

(2012) Ralf Conrad et al.   Frontiers in Microbiology

Incorporation of plant residue-derived carbon into the microeukaryotic community in a rice field soil revealed by DNA stable-isotope probing

(2011) Jun Murase et al.   FEMS MICROBIOLOGY ECOLOGY

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Piriformospora indica-a mutualistic basidiomycete with an exceptionally large plant host range

(2011) XIAOYU QIANG et al.   MOLECULAR PLANT PATHOLOGY

Bacterial populations assimilating carbon from 13C-labeled plant residue in soil: Analysis by a DNA-SIP approach

(2011) Chol Gyu Lee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada

(2011) Beth F.T. Brockett et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial and archaeal communities involved in the in situ degradation of 13C-labelled straw in the rice rhizosphere

(2011) Minita Shrestha et al.   Environmental Microbiology Reports

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Composition of Wheat Rhizosphere Antagonistic Bacteria and Wheat Sharp Eyespot as Affected by Rice Straw Mulching

(2010) Huai-Gu CHEN et al.   PEDOSPHERE

Ustilago maydisas a Pathogen

(2009) Thomas Brefort et al.   Annual Review of Phytopathology

Succession of Bacterial Populations during Plant Residue Decomposition in Rice Field Soil

(2009) J. Rui et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search of environmental descriptors to explain the variability of the bacterial diversity from maize rhizospheres across a regional scale

(2009) Thelma Castellanos et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Plant species influence microbial diversity and carbon allocation in the rhizosphere

(2009) Natalia Ladygina et al.   SOIL BIOLOGY & BIOCHEMISTRY

The global methane cycle: recent advances in understanding the microbial processes involved

(2009) Ralf Conrad   Environmental Microbiology Reports

Correlation between ferroelectric polarization and sense of helical spin order in multiferroicMnWO4

(2008) Hajime Sagayama et al.   PHYSICAL REVIEW B

Impact of wheat straw decomposition on successional patterns of soil microbial community structure

(2008) Fabiola Bastian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ultrastructural and molecular analyses of Rhizophydiales (Chytridiomycota) isolates from North America and Argentina

(2008) Peter M. Letcher et al.