Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers

Differential sensitivity to climate change of C and N cycling processes across soil horizons in a northern hardwood forest

(2017) Jorge Durán et al.   SOIL BIOLOGY & BIOCHEMISTRY

Field-based evidence for copper contamination induced changes of antibiotic resistance in agricultural soils

(2016) Hang-Wei Hu et al.   ENVIRONMENTAL MICROBIOLOGY

Change from paddy rice to vegetable growing changes nitrogen-cycling microbial communities and their variation with depth in the soil

(2016) H. L. Qin et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

The structure of bacterial communities along two vertical profiles of a deep colluvial soil

(2016) Marketa Sagova-Mareckova et al.   SOIL BIOLOGY & BIOCHEMISTRY

Vertical Segregation and Phylogenetic Characterization of Ammonia-Oxidizing Bacteria and Archaea in the Sediment of a Freshwater Aquaculture Pond

(2016) Shimin Lu et al.   Frontiers in Microbiology

Zonal Soil Type Determines Soil Microbial Responses to Maize Cropping and Fertilization

(2016) Mengxin Zhao et al.   mSystems

Land-use system shapes soil bacterial communities in Southeastern Amazon region

(2015) Lucas William Mendes et al.   APPLIED SOIL ECOLOGY

Dissimilar bacterial and fungal decomposer communities across rich to poor fen peatlands exhibit functional redundancy

(2015) Kristine M. Haynes et al.   CANADIAN JOURNAL OF SOIL SCIENCE

Effects of copper on methane emission, methanogens and methanotrophs in the rhizosphere and bulk soil of rice paddy

(2015) Ting-Ting Mao et al.   CATENA

Environmental controls on intragroup diversity of the uncultured benthicarchaeaof the miscellaneous Crenarchaeotal group lineage naturally enriched in anoxic sediments of the White Oak River estuary (North Carolina, USA)

(2015) Cassandre Sara Lazar et al.   ENVIRONMENTAL MICROBIOLOGY

Prokaryotic Community Characterization in a Mesothermic and Water- Flooded Oil Reservoir in Colombia

(2015) Jorge Hernández-Torres et al.   GEOMICROBIOLOGY JOURNAL

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

(2015) Bing Li et al.   ISME Journal

The key microorganisms for anaerobic degradation of pentachlorophenol in paddy soil as revealed by stable isotope probing

(2015) Hui Tong et al.   JOURNAL OF HAZARDOUS MATERIALS

Bacterial succession in paddy soils derived from different parent materials

(2015) Rong Sheng et al.   JOURNAL OF SOILS AND SEDIMENTS

Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests

(2015) Junjun Ding et al.   MOLECULAR ECOLOGY

Response of Archaeal and Bacterial Soil Communities to Changes Associated with Outdoor Cattle Overwintering

(2015) Alica Chroňáková et al.   PLoS One

Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites

(2015) Bruce C. Thomson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil pH and biome are both key determinants of soil archaeal community structure

(2015) Binu M. Tripathi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Activity, abundance and community structure of anammox bacteria along depth profiles in three different paddy soils

(2015) Ren Bai et al.   SOIL BIOLOGY & BIOCHEMISTRY

Parent material and vegetation influence bacterial community structure and nitrogen functional genes along deep tropical soil profiles at the Luquillo Critical Zone Observatory

(2015) Madeleine M. Stone et al.   SOIL BIOLOGY & BIOCHEMISTRY

Temporal dynamics of activeArchaeain oxygen-depleted zones of two deep lakes

(2015) Mylène Hugoni et al.   Environmental Microbiology Reports

Planting increases the abundance and structure complexity of soil core functional genes relevant to carbon and nitrogen cycling

(2015) Feng Wang et al.   Scientific Reports

Evolutionary history influences the salinity preference of bacterial taxa in wetland soils

(2015) Ember M. Morrissey et al.   Frontiers in Microbiology

Emerging spatial patterns in Antarctic prokaryotes

(2015) Chun-Wie Chong et al.   Frontiers in Microbiology

Impact of Lowland Rainforest Transformation on Diversity and Composition of Soil Prokaryotic Communities in Sumatra (Indonesia)

(2015) Dominik Schneider et al.   Frontiers in Microbiology

Functional Gene Composition, Diversity and Redundancy in Microbial Stream Biofilm Communities

(2015) Andrew Dopheide et al.   PLoS One

Ammonia oxidizer abundance in paddy soil profile with different fertilizer regimes

(2014) Jichen Wang et al.   APPLIED SOIL ECOLOGY

Soil microbial community response to seawater intrusion into coastal aquifer of Donghai Island, South China

(2014) Yanguo Teng et al.   Environmental Earth Sciences

Phage-bacteria network analysis and its implication for the understanding of coral disease

(2014) Nitzan Soffer et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial and archaeal communities in long-term contaminated surface and subsurface soil evaluated through coextracted RNA and DNA

(2014) Anu Mikkonen et al.   FEMS MICROBIOLOGY ECOLOGY

Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus-limited paddy soil

(2014) Jian-Qiang Su et al.   MOLECULAR ECOLOGY

Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities

(2014) Fabiana S. Paula et al.   MOLECULAR ECOLOGY

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes

(2014) A. K. Hawley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Change in deep soil microbial communities due to long-term fertilization

(2014) Chenhua Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Geochip-based analysis of microbial communities in alpine meadow soils in the Qinghai-Tibetan plateau

(2013) Yuguang Zhang et al.   BMC MICROBIOLOGY

Dryland soil microbial communities display spatial biogeographic patterns associated with soil depth and soil parent material

(2013) Blaire Steven et al.   FEMS MICROBIOLOGY ECOLOGY

Functional gene array-based analysis of microbial communities in heavy metals-contaminated lake sediments

(2013) Sanghoon Kang et al.   FEMS MICROBIOLOGY ECOLOGY

Response of soil respiration and microbial biomass to changing EC in saline soils

(2013) Nan Yan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Contrasting Euryarchaeota communities between upland and paddy soils exhibited similar pH-impacted biogeographic patterns

(2013) Hang-Wei Hu et al.   SOIL BIOLOGY & BIOCHEMISTRY

GeoChip-based analysis of the functional gene diversity and metabolic potential of soil microbial communities of mangroves

(2012) Shijie Bai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Responses of the functional structure of soil microbial community to livestock grazing in the Tibetan alpine grassland

(2012) Yunfeng Yang et al.   GLOBAL CHANGE BIOLOGY

One millimetre makes the difference: high-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic–anoxic interface in a flooded paddy soil

(2012) Andreas Reim et al.   ISME Journal

Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too

(2012) Binu M. Tripathi et al.   MICROBIAL ECOLOGY

Community composition and activity of microbes from saline soils and non-saline soils respond similarly to changes in salinity

(2012) Hafiz Naeem Asghar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial control over carbon cycling in soil

(2012) Joshua P. Schimel et al.   Frontiers in Microbiology

General Resilience to Cope with Extreme Events

(2012) Stephen Carpenter et al.   Sustainability

Comparison of Bacterial and Fungal Communities Between Natural and Planted Pine Forests in Subtropical China

(2011) Ming Nie et al.   CURRENT MICROBIOLOGY

Development of functional gene microarrays for microbial community analysis

(2011) Zhili He et al.   CURRENT OPINION IN BIOTECHNOLOGY

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Soil characteristics more strongly influence soil bacterial communities than land-use type

(2011) Eiko E. Kuramae et al.   FEMS MICROBIOLOGY ECOLOGY

Distribution and diversity of archaeal communities in selected Chinese soils

(2011) Peng Cao et al.   FEMS MICROBIOLOGY ECOLOGY

Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments

(2011) Etienne Yergeau et al.   ISME Journal

Strong contributors to network persistence are the most vulnerable to extinction

(2011) Serguei Saavedra et al.   NATURE

Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2010) C. Will et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Linking the patterns of change in composition and function in bacterioplankton successions along environmental gradients

(2010) Jérôme Comte et al.   ECOLOGY

Biogeochemistry of paddy soils

(2010) Ingrid Kögel-Knabner et al.   GEODERMA

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

(2010) Zhili He et al.   ISME Journal

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of Archaea and detection of crenarchaeotal amoA genes in the rivers Rhine and Têt

(2009) L Herfort et al.   AQUATIC MICROBIAL ECOLOGY

Bacterial, archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands

(2009) Martin Hartmann et al.   ENVIRONMENTAL MICROBIOLOGY

Changes in Bacterial and Archaeal Community Structure and Functional Diversity along a Geochemically Variable Soil Profile

(2008) C. M. Hansel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY