Crop rotation of flooded rice with upland maize impacts the resident and active methanogenic microbial community

Different Bacterial Populations Associated with the Roots and Rhizosphere of Rice Incorporate Plant-Derived Carbon

(2015) Marcela Hernández et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Colonization of rice roots with methanogenic archaea controls photosynthesis-derived methane emission

(2015) Judith Pump et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial succession in paddy soils derived from different parent materials

(2015) Rong Sheng et al.   JOURNAL OF SOILS AND SEDIMENTS

Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage

(2015) Björn Breidenbach et al.   Frontiers in Microbiology

High abundance and diversity of nitrite-dependent anaerobic methane-oxidizing bacteria in a paddy field profile

(2014) Leiliu Zhou et al.   FEMS MICROBIOLOGY LETTERS

Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota

(2014) M. Stieglmeier et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Effects of Water-Saving Irrigation on Emissions of Greenhouse Gases and Prokaryotic Communities in Rice Paddy Soil

(2014) Jae-Hyung Ahn et al.   MICROBIAL ECOLOGY

Effect of Paddy-Upland Rotation on Methanogenic Archaeal Community Structure in Paddy Field Soil

(2014) Dongyan Liu et al.   MICROBIAL ECOLOGY

Methane and nitrous oxide emissions from rice and maize production in diversified rice cropping systems

(2014) Sebastian Weller et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

Microbial Diversity in Hummock and Hollow Soils of Three Wetlands on the Qinghai-Tibetan Plateau Revealed by 16S rRNA Pyrosequencing

(2014) Yongcui Deng et al.   PLoS One

Structure and function of the methanogenic microbial communities in Uruguayan soils shifted between pasture and irrigated rice fields

(2013) Ana Fernandez Scavino et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community variations in an alfalfa-rice rotation system revealed by 16S rRNA gene 454-pyrosequencing

(2013) Ana R. Lopes et al.   FEMS MICROBIOLOGY ECOLOGY

13C pulse-chase labeling comparative assessment of the active methanogenic archaeal community composition in the transgenic and nontransgenic parental rice rhizospheres

(2013) Weijing Zhu et al.   FEMS MICROBIOLOGY ECOLOGY

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Seasonal Transition of Active Bacterial and Archaeal Communities in Relation to Water Management in Paddy Soils

(2013) Hideomi Itoh et al.   MICROBES AND ENVIRONMENTS

Pyrosequencing Reveals Contrasting Soil Bacterial Diversity and Community Structure of Two Main Winter Wheat Cropping Systems in China

(2013) Jun Zhao et al.   MICROBIAL ECOLOGY

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Set Up of an Automatic Water Quality Sampling System in Irrigation Agriculture

(2013) Emanuel Heinz et al.   SENSORS

Evaluation of direct and indirect phosphorus limitation of methanogenic pathways in a calcareous subtropical wetland soil

(2013) Cassandra A. Medvedeff et al.   SOIL BIOLOGY & BIOCHEMISTRY

Methanogens at the top of the world: occurrence and potential activity of methanogens in newly deglaciated soils in high-altitude cold deserts in the Western Himalayas

(2013) Katrin Aschenbach et al.   Frontiers in Microbiology

Characterization of the bacterial and archaeal communities in rice field soils subjected to long-term fertilization practices

(2012) Jae-Hyung Ahn et al.   JOURNAL OF MICROBIOLOGY

Intermittent irrigation changes production, oxidation, and emission of CH4 in paddy fields determined with stable carbon isotope technique

(2012) Guangbin Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Changes in community structure of methanogenic archaea brought about by water-saving practice in paddy field soil

(2012) Takeshi Watanabe et al.   SOIL BIOLOGY & BIOCHEMISTRY

Methanogenic Pathway and Archaeal Communities in Three Different Anoxic Soils Amended with Rice Straw and Maize Straw

(2012) Ralf Conrad et al.   Frontiers in Microbiology

Growth and yield of maize and timber trees in smallholder agroforestry systems in Claveria, northern Mindanao, Philippines

(2011) Manuel Bertomeu   AGROFORESTRY SYSTEMS

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

(2011) Michael Pester et al.   CURRENT OPINION IN MICROBIOLOGY

rRNA-based profiling of bacteria in the axilla of healthy males suggests right-left asymmetry in bacterial activity

(2011) Markus Egert et al.   FEMS MICROBIOLOGY ECOLOGY

Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions

(2011) Roey Angel et al.   ISME Journal

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Methane emissions from upland forest soils and vegetation

(2011) J. P. Megonigal et al.   TREE PHYSIOLOGY

Methane emission from rice fields as affected by land use change

(2010) Moniruzzaman Khan Eusufzai et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Bacterial Communities Associated with the Lichen Symbiosis

(2010) Scott T. Bates et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Influence of Plant Polymers on the Distribution and Cultivation of Bacteria in the PhylumAcidobacteria

(2010) Stephanie A. Eichorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Acidobacteria, Rubrobacteridae and Chloroflexi are abundant among very slow-growing and mini-colony-forming soil bacteria

(2010) Kathryn E. R. Davis et al.   ENVIRONMENTAL MICROBIOLOGY

Regulation of microbial methane production and oxidation by intermittent drainage in rice field soil

(2010) Ke Ma et al.   FEMS MICROBIOLOGY ECOLOGY

Ecological and Evolutionary Interactions in Syntrophic Methanogenic Consortia

(2010) Souichiro Kato et al.   MICROBES AND ENVIRONMENTS

Rice-maize systems of South Asia: current status, future prospects and research priorities for nutrient management

(2010) Jagadish Timsina et al.   PLANT AND SOIL

Succession of Bacterial Populations during Plant Residue Decomposition in Rice Field Soil

(2009) J. Rui et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distribution Patterns of the Members of Phylum Acidobacteria in Global Soil Samples

(2009) Sang-Hoon Lee   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

Distinct members of a stable methanogenic archaeal community transcribe mcrA genes under flooded and drained conditions in Japanese paddy field soil

(2008) Takeshi Watanabe et al.   SOIL BIOLOGY & BIOCHEMISTRY