标题
Plant-associated fungal communities in the light of meta’omics
作者
关键词
Meta’omics, Metaomics, Fungal community, Metagenomics, Metaproteomics, Metatranscriptomics, Metametabolomics, Phyllosphere fungi, Endophytic fungi, Litter decomposition, Decomposer fungi, Root-associated fungi, Arbuscular mycorrhiza, Ectomycorrhiza, Ericoid mycorrhiza, Soil fungi, Functional diversity, Environmental processes, Distance decay, Environmental filtering, Saisonality, Temporal shift, Fungal traits
出版物
FUNGAL DIVERSITY
Volume 75, Issue 1, Pages 1-25
出版商
Springer Nature
发表日期
2015-04-25
DOI
10.1007/s13225-015-0334-9
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Fungal succession in the needle litter of a montane Picea abies forest investigated through strain isolation and molecular fingerprinting
- (2015) Zuzana Haňáčková et al. Fungal Ecology
- Effects of tree identity dominate over tree diversity on the soil microbial community structure
- (2015) Andrea Scheibe et al. SOIL BIOLOGY & BIOCHEMISTRY
- Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees
- (2015) Michaela Urbanová et al. SOIL BIOLOGY & BIOCHEMISTRY
- Tree genotype and genetically based growth traits structure twig endophyte communities
- (2014) Louis J. Lamit et al. AMERICAN JOURNAL OF BOTANY
- Microbial genomics, transcriptomics and proteomics: new discoveries in decomposition research using complementary methods
- (2014) Petr Baldrian et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Next generation sequencing technology: Advances and applications
- (2014) H.P.J. Buermans et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
- Ectomycorrhizal fungal hyphae communities vary more along a pH and nitrogen gradient than between decayed wood and mineral soil microsites
- (2014) Jennifer K.M. Walker et al. Botany
- The microbial ecology of flowers: an emerging frontier in phyllosphere research
- (2014) Kristin Aleklett et al. Botany
- Global Analysis of mRNA Isoform Half-Lives Reveals Stabilizing and Destabilizing Elements in Yeast
- (2014) Joseph V. Geisberg et al. CELL
- Deciphering mycorrhizal fungi in cultivated Phalaenopsis microbiome with next-generation sequencing of multiple barcodes
- (2014) Chao-Li Huang et al. FUNGAL DIVERSITY
- Contrasting soil fungal communities in Mediterranean pine forests subjected to different wildfire frequencies
- (2014) Erika Buscardo et al. FUNGAL DIVERSITY
- The sooty moulds
- (2014) Putarak Chomnunti et al. FUNGAL DIVERSITY
- Environmental filtering affects soil fungal community composition more than dispersal limitation at regional scales
- (2014) Stephanie N. Kivlin et al. Fungal Ecology
- Communities of fungal endophytes in tropical forest grasses: highly diverse host- and habitat generalists characterized by strong spatial structure
- (2014) K. Lindsay Higgins et al. Fungal Ecology
- Distinct signatures of host–microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet
- (2014) Alesia Walker et al. ISME Journal
- When the forest dies: the response of forest soil fungi to a bark beetle-induced tree dieback
- (2014) Martina Štursová et al. ISME Journal
- The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems
- (2014) Christos Gougoulias et al. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE
- Environmental Controls on Fungal Community Composition and Abundance Over 3 Years in Native and Degraded Shrublands
- (2014) Clare Glinka et al. MICROBIAL ECOLOGY
- Does host plant richness explain diversity of ectomycorrhizal fungi? Re-evaluation of Gaoet al. (2013) data sets reveals sampling effects
- (2014) Leho Tedersoo et al. MOLECULAR ECOLOGY
- Rich and cold: diversity, distribution and drivers of fungal communities in patterned-ground ecosystems of the North American Arctic
- (2014) I. Timling et al. MOLECULAR ECOLOGY
- Elevational disease distribution in a natural plant-pathogen system: insights from changes across host populations and climate
- (2014) Jessica L. Abbate et al. OIKOS
- Factors controlling decomposition rates of fine root litter in temperate forests and grasslands
- (2014) Emily F. Solly et al. PLANT AND SOIL
- Diversity and Spatial Structure of Belowground Plant–Fungal Symbiosis in a Mixed Subtropical Forest of Ectomycorrhizal and Arbuscular Mycorrhizal Plants
- (2014) Hirokazu Toju et al. PLoS One
- A Revised Design for Microarray Experiments to Account for Experimental Noise and Uncertainty of Probe Response
- (2014) Alex E. Pozhitkov et al. PLoS One
- Leaf and Root-Associated Fungal Assemblages Do Not Follow Similar Elevational Diversity Patterns
- (2014) Aurore Coince et al. PLoS One
- Endemism and functional convergence across the North American soil mycobiome
- (2014) J. M. Talbot et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Top-down proteomics: Enhancing 2D gel electrophoresis from tissue processing to high-sensitivity protein detection
- (2014) Elise P. Wright et al. PROTEOMICS
- Protein extraction from plant tissues for 2DE and its application in proteomic analysis
- (2014) Xiaolin Wu et al. PROTEOMICS
- Global diversity and geography of soil fungi
- (2014) L. Tedersoo et al. SCIENCE
- Temporal and seasonal change in microbial community structure of an undisturbed, disturbed, and carbon-amended pasture soil
- (2014) Bryan A. Stevenson et al. SOIL BIOLOGY & BIOCHEMISTRY
- Going underground: root traits as drivers of ecosystem processes
- (2014) Richard D. Bardgett et al. TRENDS IN ECOLOGY & EVOLUTION
- Ecological understanding of root-infecting fungi using trait-based approaches
- (2014) Carlos A. Aguilar-Trigueros et al. TRENDS IN PLANT SCIENCE
- Climate fails to predict wood decomposition at regional scales
- (2014) Mark A. Bradford et al. Nature Climate Change
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- (2014) Susan Hodgson et al. Ecology and Evolution
- Untangling the fungal niche: the trait-based approach
- (2014) Thomas W. Crowther et al. Frontiers in Microbiology
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- (2014) Gerhard Rambold et al. MycoKeys
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- (2013) Douglas Gatte-Picchi et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Juniperus virginiana encroachment into upland oak forests alters arbuscular mycorrhizal abundance and litter chemistry
- (2013) Ryan J. Williams et al. APPLIED SOIL ECOLOGY
- Effects of two grass species on the composition of soil fungal communities
- (2013) B. Mouhamadou et al. BIOLOGY AND FERTILITY OF SOILS
- Analysis of soil fungal communities by amplicon pyrosequencing: current approaches to data analysis and the introduction of the pipeline SEED
- (2013) Tomáš Větrovský et al. BIOLOGY AND FERTILITY OF SOILS
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- (2013) Brian P. Lankadurai et al. ENVIRONMENTAL REVIEWS
- Metabolomic analysis of soil communities can be used for pollution assessment
- (2013) Oliver A.H. Jones et al. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY
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- (2013) Eiko E. Kuramae et al. FEMS MICROBIOLOGY ECOLOGY
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- (2013) Trichur S. Suryanarayanan Fungal Ecology
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- (2013) Kathleen K. Treseder et al. Fungal Ecology
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- (2013) Lori A Phillips et al. ISME Journal
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- (2013) Kabir G Peay et al. ISME Journal
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- (2013) Jeannine Wehner et al. JOURNAL OF ECOLOGY
- The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales
- (2013) Mohammad Bahram et al. JOURNAL OF ECOLOGY
- Which metaproteome? The impact of protein extraction bias on metaproteomic analyses
- (2013) Dagmar Hajkova Leary et al. MOLECULAR AND CELLULAR PROBES
- Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical forest
- (2013) Jennifer Kerekes et al. MOLECULAR ECOLOGY
- The spatial scaling of saprotrophic fungal beta diversity in decomposing leaves
- (2013) Larry M. Feinstein et al. MOLECULAR ECOLOGY
- Towards a unified paradigm for sequence-based identification of fungi
- (2013) Urmas Kõljalg et al. MOLECULAR ECOLOGY
- High-throughput sequencing for biology and medicine
- (2013) W. W. Soon et al. Molecular Systems Biology
- Computational meta'omics for microbial community studies
- (2013) N. Segata et al. Molecular Systems Biology
- Diagnostic assessment of mycodiversity in environmental samples by fungal ITS1 rDNA length polymorphism
- (2013) Alfons R. Weig et al. MYCOLOGICAL PROGRESS
- Hygrocybe virginea is a systemic endophyte of Plantago lanceolata
- (2013) Sofia A. Tello et al. MYCOLOGICAL PROGRESS
- Comparison of root-associated communities of native and non-native ectomycorrhizal hosts in an urban landscape
- (2013) K. Lothamer et al. MYCORRHIZA
- Fine-scale diversity and distribution of ectomycorrhizal fungal mycelium in a Scots pine forest
- (2013) Ian C. Anderson et al. NEW PHYTOLOGIST
- Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
- (2013) Björn D. Lindahl et al. NEW PHYTOLOGIST
- Seasonal dynamics of fungal communities in a temperate oak forest soil
- (2013) Jana Voříšková et al. NEW PHYTOLOGIST
- Phylogenetic relationships among host plants explain differences in fungal species richness and community composition in ectomycorrhizal symbiosis
- (2013) Leho Tedersoo et al. NEW PHYTOLOGIST
- Diversity of the Capnocheirides rhododendri-dominated fungal community in the phyllosphere of Rhododendron ferrugineum L.
- (2013) Fabienne Flessa et al. NOVA HEDWIGIA
- Little evidence for niche partitioning among ectomycorrhizal fungi on spruce seedlings planted in decayed wood versus mineral soil microsites
- (2013) Jennifer K. M. Walker et al. OECOLOGIA
- Metabolites of endophytic fungi as novel source of biofungicide: a review
- (2013) Susheel Kumar et al. PHYTOCHEMISTRY REVIEWS
- A new tool of the trade: plant-trait based approaches in microbial ecology
- (2013) Jeff R. Powell et al. PLANT AND SOIL
- Plant species effect on the decomposition and chemical changes of leaf litter in grassland and pine and oak forest soils
- (2013) Takashi Osono et al. PLANT AND SOIL
- Mycorrhizas and mycorrhizal fungal communities throughout ecosystem development
- (2013) Ian A. Dickie et al. PLANT AND SOIL
- The production and turnover of extramatrical mycelium of ectomycorrhizal fungi in forest soils: role in carbon cycling
- (2013) A. Ekblad et al. PLANT AND SOIL
- Discovery of Glycoside Hydrolase Enzymes in an Avicel-Adapted Forest Soil Fungal Community by a Metatranscriptomic Approach
- (2013) Kazuto Takasaki et al. PLoS One
- Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation
- (2013) Stéphane Uroz et al. PLoS One
- Tracking Fungal Community Responses to Maize Plants by DNA- and RNA-Based Pyrosequencing
- (2013) Eiko E. Kuramae et al. PLoS One
- Diverse Honeydew-Consuming Fungal Communities Associated with Scale Insects
- (2013) Manpreet K. Dhami et al. PLoS One
- Correction: Correlations between Colonization of Onion Thrips and Leaf Reflectance Measures across Six Cabbage Varieties
- (2013) János Bálint et al. PLoS One
- Ion Torrent PGM as Tool for Fungal Community Analysis: A Case Study of Endophytes in Eucalyptus grandis Reveals High Taxonomic Diversity
- (2013) Martin Kemler et al. PLoS One
- Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest
- (2013) K. E. Clemmensen et al. SCIENCE
- Seasonal variation in functional properties of microbial communities in beech forest soil
- (2013) Marianne Koranda et al. SOIL BIOLOGY & BIOCHEMISTRY
- Improving Griffith's protocol for co-extraction of microbial DNA and RNA in adsorptive soils
- (2013) Mélanie M. Paulin et al. SOIL BIOLOGY & BIOCHEMISTRY
- Illumina metabarcoding of a soil fungal community
- (2013) Philipp-André Schmidt et al. SOIL BIOLOGY & BIOCHEMISTRY
- Functional diversity and resource partitioning in fungi associated with the fine feeder roots of forest trees
- (2013) Gavin Kernaghan SYMBIOSIS
- Evaluation of molecular community analysis methods for discerning fecal sources and human waste
- (2013) Yiping Cao et al. WATER RESEARCH
- How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants
- (2013) Hirokazu Toju et al. Ecology and Evolution
- Community composition of root-associated fungi in aQuercus-dominated temperate forest: “codominance” of mycorrhizal and root-endophytic fungi
- (2013) Hirokazu Toju et al. Ecology and Evolution
- Microbial Diversity in the Era of Omic Technologies
- (2013) Sofia Nikolaki et al. Biomed Research International
- CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota
- (2013) James Robert White et al. Microbiome
- From meta-omics to causality: experimental models for human microbiome research
- (2013) Joëlle V Fritz et al. Microbiome
- Global species numbers of fungi: are tropical studies and molecular approaches contributing to a more robust estimate?
- (2012) D. L. Hawksworth BIODIVERSITY AND CONSERVATION
- Metagenomics of microbial life in extreme temperature environments
- (2012) Anna Lewin et al. CURRENT OPINION IN BIOTECHNOLOGY
- Fungal endophytes of grasses
- (2012) Aiko Tanaka et al. CURRENT OPINION IN PLANT BIOLOGY
- The origin of litter chemical complexity during decomposition
- (2012) Kyle Wickings et al. ECOLOGY LETTERS
- Advances in computational analysis of metagenome sequences
- (2012) Colin F. Davenport et al. ENVIRONMENTAL MICROBIOLOGY
- Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers
- (2012) Martina Štursová et al. FEMS MICROBIOLOGY ECOLOGY
- Endophytic mediation of reactive oxygen species and antioxidant activity in plants: a review
- (2012) Cyd E. Hamilton et al. FUNGAL DIVERSITY
- Annuality of Central European deciduous tree leaves delimits community development of epifoliar pigmented fungi
- (2012) Fabienne Flessa et al. Fungal Ecology
- Stayin' alive: survival of mycorrhizal fungal propagules from 6-yr-old forest soil
- (2012) Nhu H. Nguyen et al. Fungal Ecology
- Soil fungal community composition does not alter along a latitudinal gradient through the maritime and sub-Antarctic
- (2012) Paul G. Dennis et al. Fungal Ecology
- Community structure and preference of endophytic fungi of three woody plants in a mixed forest
- (2012) X. Sun et al. Fungal Ecology
- Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica)
- (2012) Tristan Cordier et al. Fungal Ecology
- Estimation of fungal biomass in forest litter and soil
- (2012) Petr Baldrian et al. Fungal Ecology
- Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions
- (2012) Thomas Schneider et al. ISME Journal
- The role of local environment and geographical distance in determining community composition of arbuscular mycorrhizal fungi at the landscape scale
- (2012) Christina Hazard et al. ISME Journal
- Fungal community on decomposing leaf litter undergoes rapid successional changes
- (2012) Jana Voříšková et al. ISME Journal
- Environmental microbiology through the lens of high-throughput DNA sequencing: Synopsis of current platforms and bioinformatics approaches
- (2012) Ramiro Logares et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Combined Analyses of Bacterial, Fungal and Nematode Communities in Andosolic Agricultural Soils in Japan
- (2012) Zhihua Bao et al. MICROBES AND ENVIRONMENTS
- Tools for Label-free Peptide Quantification
- (2012) Sven Nahnsen et al. MOLECULAR & CELLULAR PROTEOMICS
- Amplicon-pyrosequencing-based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient
- (2012) Marie L. Davey et al. MOLECULAR ECOLOGY
- Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing
- (2012) Marie L. Davey et al. NEW PHYTOLOGIST
- The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica ) varies significantly along an elevation gradient
- (2012) Tristan Cordier et al. NEW PHYTOLOGIST
- Fungal community composition shifts along a leaf degradation gradient in a European beech forest
- (2012) Derek Peršoh et al. PLANT AND SOIL
- Summer season and long-term drought increase the richness of bacteria and fungi in the foliar phyllosphere ofQuercus ilexin a mixed Mediterranean forest
- (2012) J. Peñuelas et al. PLANT BIOLOGY
- Comparative Metaproteomics and Diversity Analysis of Human Intestinal Microbiota Testifies for Its Temporal Stability and Expression of Core Functions
- (2012) Carolin A. Kolmeder et al. PLoS One
- Metatranscriptomics Reveals the Diversity of Genes Expressed by Eukaryotes in Forest Soils
- (2012) Coralie Damon et al. PLoS One
- High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples
- (2012) Hirokazu Toju et al. PLoS One
- Communities of Arbuscular Mycorrhizal Fungi Detected in Forest Soil Are Spatially Heterogeneous but Do Not Vary throughout the Growing Season
- (2012) John Davison et al. PLoS One
- Hypoxylon pulicicidum sp. nov. (Ascomycota, Xylariales), a Pantropical Insecticide-Producing Endophyte
- (2012) Gerald F. Bills et al. PLoS One
- Differences in Soil Fungal Communities between European Beech (Fagus sylvatica L.) Dominated Forests Are Related to Soil and Understory Vegetation
- (2012) Tesfaye Wubet et al. PLoS One
- Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
- (2012) C. L. Schoch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape
- (2012) N. B. Zimmerman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Endophytic Insect-Parasitic Fungi Translocate Nitrogen Directly from Insects to Plants
- (2012) S. W. Behie et al. SCIENCE
- Parameter estimation for models of ligninolytic and cellulolytic enzyme kinetics
- (2012) Gangsheng Wang et al. SOIL BIOLOGY & BIOCHEMISTRY
- Temporal dynamics of microbial communities on decomposing leaf litter of 10 plant species in relation to decomposition rate
- (2012) Sarah R. Bray et al. SOIL BIOLOGY & BIOCHEMISTRY
- Decomposition of black locust and black pine leaf litter in two coeval forest stands on Mount Vesuvius and dynamics of organic components assessed through proximate analysis and NMR spectroscopy
- (2012) Anna De Marco et al. SOIL BIOLOGY & BIOCHEMISTRY
- Soil metaproteomics – Comparative evaluation of protein extraction protocols
- (2012) Katharina M. Keiblinger et al. SOIL BIOLOGY & BIOCHEMISTRY
- Litter chemistry changes more rapidly when decomposed at home but converges during decomposition–transformation
- (2012) Matthew D. Wallenstein et al. SOIL BIOLOGY & BIOCHEMISTRY
- Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition
- (2012) Jennifer M. Talbot et al. SOIL BIOLOGY & BIOCHEMISTRY
- The genus Cladosporium
- (2012) K. Bensch et al. STUDIES IN MYCOLOGY
- Experimental ‘omics’ data in tree research: facing complexity
- (2012) Wolfgang zu Castell et al. TREES-STRUCTURE AND FUNCTION
- Hidden Fungi, Emergent Properties: Endophytes and Microbiomes
- (2011) Andrea Porras-Alfaro et al. Annual Review of Phytopathology
- Litter decay rates are determined by lignin chemistry
- (2011) Jennifer M. Talbot et al. BIOGEOCHEMISTRY
- Microbial dynamics in Mediterranean Moder humus
- (2011) Anna Andreetta et al. BIOLOGY AND FERTILITY OF SOILS
- Ecological metabolomics: overview of current developments and future challenges
- (2011) Jordi Sardans et al. CHEMOECOLOGY
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- (2011) Zhili He et al. CURRENT OPINION IN BIOTECHNOLOGY
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- (2011) Eunmi Ban et al. ELECTROPHORESIS
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- (2011) Sebastian Werner et al. Fungal Biology
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- (2011) Guillaume Lentendu et al. FUNGAL DIVERSITY
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- (2011) Alex J. Dumbrell et al. NEW PHYTOLOGIST
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- (2011) Heike Knicker ORGANIC GEOCHEMISTRY
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- (2011) Regina S. Redman et al. PLoS One
- Global diversity and distribution of arbuscular mycorrhizal fungi
- (2011) Stephanie N. Kivlin et al. SOIL BIOLOGY & BIOCHEMISTRY
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- (2011) David J. Burke et al. SOIL BIOLOGY & BIOCHEMISTRY
- Metagenomic Analyses: Past and Future Trends
- (2010) Carola Simon et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Suitability of Quantitative Real-Time PCR To Estimate the Biomass of Fungal Root Endophytes
- (2010) C. Tellenbach et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2010) Dominik Begerow et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
- (2010) Eva Bellemain et al. BMC MICROBIOLOGY
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- (2010) Alexandra Z Worden et al. CURRENT OPINION IN MICROBIOLOGY
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- (2010) Jaroslav Šnajdr et al. FEMS MICROBIOLOGY ECOLOGY
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- (2010) Derek Peršoh et al. Fungal Biology
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- (2010) Witoon Purahong et al. FUNGAL DIVERSITY
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- (2010) Kari Saikkonen et al. FUNGAL DIVERSITY
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- (2010) William C. Rice et al. GEODERMA
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- (2010) Anna Engelbrektson et al. ISME Journal
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- (2010) Johannes Rousk et al. ISME Journal
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- (2010) Taina K. Lundell et al. JOURNAL OF BASIC MICROBIOLOGY
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- (2010) Shauna M. Dineen et al. JOURNAL OF VIROLOGICAL METHODS
- Phylogenetic similarity and structure of Agaricomycotina communities across a forested landscape
- (2010) IVAN P. EDWARDS et al. MOLECULAR ECOLOGY
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- (2010) ARI JUMPPONEN et al. MOLECULAR ECOLOGY
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- (2010) ANTHONY S. AMEND et al. MOLECULAR ECOLOGY
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
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- (2010) A. Jumpponen et al. NEW PHYTOLOGIST
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- (2010) Nathalie J. A. Curlevski et al. PLANT AND SOIL
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- (2010) Kenji Ono et al. PLANT AND SOIL
- Comparing microarrays and next-generation sequencing technologies for microbial ecology research
- (2010) Seong Woon Roh et al. TRENDS IN BIOTECHNOLOGY
- The evolution of animals and plants via symbiosis with microorganisms
- (2010) Eugene Rosenberg et al. Environmental Microbiology Reports
- A Primer on Metagenomics
- (2010) John C. Wooley et al. PLoS Computational Biology
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- (2009) Y. Liang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2009) D. J. Burke et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2009) Caroline M. Preston et al. ECOSYSTEMS
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- (2009) Leho Tedersoo et al. ENVIRONMENTAL MICROBIOLOGY
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- (2009) Kayla A. Kaiser et al. MAGNETIC RESONANCE IN CHEMISTRY
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- (2009) M. Buée et al. NEW PHYTOLOGIST
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- (2009) Manuela Krüger et al. NEW PHYTOLOGIST
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- (2009) A. Jumpponen et al. NEW PHYTOLOGIST
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- (2009) M. Öpik et al. NEW PHYTOLOGIST
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- (2009) R. J. Rodriguez et al. NEW PHYTOLOGIST
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- (2009) Hye Kyong Kim et al. PHYTOCHEMICAL ANALYSIS
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- (2009) G. Hernandez et al. PLANT PHYSIOLOGY
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- (2009) N. Delmotte et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2009) Thomas Schneider et al. PROTEOMICS
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- (2009) Joerg Seidler et al. PROTEOMICS
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- (2009) Edward Ayres et al. SOIL BIOLOGY & BIOCHEMISTRY
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- (2009) Takahide A. Ishida et al. SOIL BIOLOGY & BIOCHEMISTRY
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- (2008) P.-E. Courty et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2008) M. Sagova-Mareckova et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2008) Susan M. Chambers et al. FEMS MICROBIOLOGY ECOLOGY
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- (2008) Derek Peršoh et al. JOURNAL OF MICROBIOLOGICAL METHODS
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- (2008) Ariana Kubartová et al. MICROBIAL ECOLOGY
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- (2008) Micah Hamady et al. NATURE METHODS
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- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
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- (2008) Paul Wilmes et al. PLoS One
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- (2008) Tim Urich et al. PLoS One
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