Tracking Fungal Community Responses to Maize Plants by DNA- and RNA-Based Pyrosequencing

Testing Potential Effects of Maize Expressing the Bacillus thuringiensis Cry1Ab Endotoxin (Bt Maize) on Mycorrhizal Fungal Communities via DNA- and RNA-Based Pyrosequencing and Molecular Fingerprinting

(2012) Erik Verbruggen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal community associated with genetically modified poplar during metal phytoremediation

(2012) Moonsuk Hur et al.   JOURNAL OF MICROBIOLOGY

13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline

(2012) S. E. Hannula et al.   NEW PHYTOLOGIST

A 3-Year Study Reveals That Plant Growth Stage, Season and Field Site Affect Soil Fungal Communities while Cultivar and GM-Trait Have Minor Effects

(2012) Silja Emilia Hannula et al.   PLoS One

ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds

(2011) Antonietta Mello et al.   MYCOLOGIA

Analysis of ribosomal RNA indicates seasonal fungal community dynamics in Andropogon gerardii roots

(2011) Ari Jumpponen   MYCORRHIZA

Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing

(2011) Alex J. Dumbrell et al.   NEW PHYTOLOGIST

Assessment of the arbuscular mycorrhizal fungal community in roots and rhizosphere soils of Bt corn and their non-Bt isolines

(2011) Fengxiao Tan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Assessment of soil fungal communities using pyrosequencing

(2010) Young Woon Lim et al.   JOURNAL OF MICROBIOLOGY

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

In situ dynamics of soil fungal communities under different genotypes of potato, including a genetically modified cultivar

(2010) S.E. Hannula et al.   SOIL BIOLOGY & BIOCHEMISTRY

Culture-independent molecular techniques for soil microbial ecology

(2010) Penny R. Hirsch et al.   SOIL BIOLOGY & BIOCHEMISTRY

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Do genetically modified plants impact arbuscular mycorrhizal fungi?

(2009) Wenke Liu   ECOTOXICOLOGY

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Genetically modified cotton has no effect on arbuscular mycorrhizal colonisation of roots

(2008) O.G.G. Knox et al.   FIELD CROPS RESEARCH

DNA- and RNA-derived assessments of fungal community composition in soil amended with sewage sludge rich in cadmium, copper and zinc

(2008) Ian C. Anderson et al.   SOIL BIOLOGY & BIOCHEMISTRY