Amplicon-pyrosequencing-based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient

Towards global patterns in the diversity and community structure of ectomycorrhizal fungi

(2012) LEHO TEDERSOO et al.   MOLECULAR ECOLOGY

Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing

(2012) Marie L. Davey et al.   NEW PHYTOLOGIST

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Patterns of macromycete community assemblage along an elevation gradient: options for fungal gradient and metacommunity analyse

(2011) Marko Gómez-Hernández et al.   BIODIVERSITY AND CONSERVATION

Role of selected dark septate endophyte species and other hyphomycetes as saprobes on moss gametophytes

(2011) Melissa J. Day et al.   Botany

In vitro degradation of the moss Hylocomium splendens by three pleosporalean fungi

(2011) Melissa J. Day et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

(2011) Thomas M. Gihring et al.   ENVIRONMENTAL MICROBIOLOGY

Multiple markers pyrosequencing reveals highly diverse and host-specific fungal communities on the mangrove trees Avicennia marina and Rhizophora stylosa

(2011) Yonathan Arfi et al.   FEMS MICROBIOLOGY ECOLOGY

Mycorrhizas and secondary succession in aspen–conifer forests: Light limitation differentially affects a dominant early and late successional species

(2011) Amy L. Clark et al.   FOREST ECOLOGY AND MANAGEMENT

Assessment of soil fungal diversity in different alpine tundra habitats by means of pyrosequencing

(2011) Guillaume Lentendu et al.   FUNGAL DIVERSITY

Climate change feedbacks to microbial decomposition in boreal soils

(2011) Steven D. Allison et al.   Fungal Ecology

Community structure of ericoid mycorrhizas and root-associated fungi of Vaccinium membranaceum across an elevation gradient in the Canadian Rocky Mountains

(2011) Monika A. Gorzelak et al.   Fungal Ecology

Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing

(2011) RAKEL BLAALID et al.   MOLECULAR ECOLOGY

Cortinarius sect. Armillati in northern Europe

(2011) Tuula Niskanen et al.   MYCOLOGIA

High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples

(2011) Håvard Kauserud et al.   MYCORRHIZA

Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran

(2011) Mohammad Bahram et al.   NEW PHYTOLOGIST

Forest floor properties across sharp compositional boundaries separating trembling aspen and jack pine stands in the southern boreal forest

(2011) Samuel Royer-Tardif et al.   PLANT AND SOIL

Soil fungal community structure along a soil health gradient in pea fields examined using deep amplicon sequencing

(2011) Lihui Xu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada

(2011) Beth F.T. Brockett et al.   SOIL BIOLOGY & BIOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Saprobic and parasitic interactions of Coniochaeta velutina with mosses

(2010) Marie L. Davey et al.   Botany

Quantitative Assessment of the Human Gut Microbiome Using Multitag Pyrosequencing

(2010) Patrick Gillevet et al.   CHEMISTRY & BIODIVERSITY

Order of plant host establishment alters the composition of arbuscular mycorrhizal communities

(2010) Natasha Teutsch Hausmann et al.   ECOLOGY

The Bryosphere: An Integral and Influential Component of the Earth’s Biosphere

(2010) Zoë Lindo et al.   ECOSYSTEMS

Root endophytes along a primary succession gradient in northern Finland

(2010) M. V. Tejesvi et al.   FUNGAL DIVERSITY

Identifying wood-inhabiting fungi with 454 sequencing – what is the probability that BLAST gives the correct species?

(2010) Otso Ovaskainen et al.   Fungal Ecology

Massively parallel 454-sequencing of fungal communities inQuercusspp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites

(2010) ARI JUMPPONEN et al.   MOLECULAR ECOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Weak habitat specificity in ectomycorrhizal communities associated with Salix herbacea and Salix polaris in alpine tundra

(2010) Martin Ryberg et al.   MYCORRHIZA

Ectomycorrhizas and water relations of trees: a review

(2010) Tarja Lehto et al.   MYCORRHIZA

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

DNA barcoding of arbuscular mycorrhizal fungi

(2010) Herbert Stockinger et al.   NEW PHYTOLOGIST

Phylogenetic Distribution of Fungal Sterols

(2010) John D. Weete et al.   PLoS One

Fungal growth on a common wood substrate across a tropical elevation gradient: Temperature sensitivity, community composition, and potential for above-ground decomposition

(2010) Courtney L. Meier et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies

(2010) Patrick D. Schloss   PLoS Computational Biology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Changes in ectomycorrhizal community structure on two containerized oak hosts across an experimental hydrologic gradient

(2009) J. Cavender-Bares et al.   MYCORRHIZA

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperateQuercus macrocarpaphyllosphere

(2009) A. Jumpponen et al.   NEW PHYTOLOGIST

Microbial community composition and activity in different Alpine vegetation zones

(2009) Ika Djukic et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal biomass associated with the phyllosphere of bryophytes and vascular plants

(2009) M.L. Davey et al.  

High diversity of fungi associated with living parts of boreal forest bryophytes

(2008) Håvard Kauserud et al.   Botany

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Fungal root endophytes from natural vegetation in Mediterranean environments with special reference to Fusarium spp

(2008) Jose G. Maciá-Vicente et al.   FEMS MICROBIOLOGY ECOLOGY

Fungal diversity in the rhizosphere of endemic plant species of Tenerife (Canary Islands): relationship to vegetation zones and environmental factors

(2008) Christin Zachow et al.   ISME Journal