Different mutational function of low- and high-linear energy transfer heavy-ion irradiation demonstrated by whole-genome resequencing of Arabidopsis mutants

Deletion-bias in DNA double-strand break repair differentially contributes to plant genome shrinkage

(2017) Giang T. H. Vu et al.   NEW PHYTOLOGIST

Production of a thermal stress resistant mutantEuglena gracilisstrain using Fe-ion beam irradiation

(2016) Koji Yamada et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

AMAP: A pipeline for whole-genome mutation detection in Arabidopsis thaliana

(2016) Kotaro Ishii et al.   GENES & GENETIC SYSTEMS

Genome-Wide Sequencing of 41 Rice ( Oryza sativa L.) Mutated Lines Reveals Diverse Mutations Induced by Fast-Neutron Irradiation

(2016) Guotian Li et al.   Molecular Plant

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

(2016) Serena Nik-Zainal et al.   NATURE

UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana

(2016) Eva-Maria Willing et al.   Nature Communications

Efficient selective breeding of live oil-rich Euglena gracilis with fluorescence-activated cell sorting

(2016) Koji Yamada et al.   Scientific Reports

Accelerating Gene Discovery by Phenotyping Whole-Genome Sequenced Multi-mutation Strains and Using the Sequence Kernel Association Test (SKAT)

(2016) Tiffany A. Timbers et al.   PLoS Genetics

Suppressor Screen and Phenotype Analyses Revealed an Emerging Role of the Monofunctional Peroxisomal Enoyl-CoA Hydratase 2 in Compensated Cell Enlargement

(2016) Mana Katano et al.   Frontiers in Plant Science

Linear Energy Transfer-Dependent Change in Rice Gene Expression Profile after Heavy-Ion Beam Irradiation

(2016) Kotaro Ishii et al.   PLoS One

A new physical mapping approach refines the sex-determining gene positions on the Silene latifolia Y-chromosome

(2016) Yusuke Kazama et al.   Scientific Reports

Mammalian polymerase θ promotes alternative NHEJ and suppresses recombination

(2015) Pedro A. Mateos-Gomez et al.   NATURE

Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato

(2015) Kenta Shirasawa et al.   PLANT BIOTECHNOLOGY JOURNAL

Comprehensive identification of mutations induced by heavy-ion beam irradiation inArabidopsis thaliana

(2015) Tomonari Hirano et al.   PLANT JOURNAL

The Major DNA Repair Pathway after Both Proton and Carbon-Ion Radiation is NHEJ, but the HR Pathway is More Relevant in Carbon Ions

(2015) Ariungerel Gerelchuluun et al.   RADIATION RESEARCH

Effect of high-LET Fe-ion beam irradiation on mutation induction in Arabidopsis thaliana

(2015) Yusuke Kazama et al.   GENES & GENETIC SYSTEMS

C. eleganswhole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency

(2014) Bettina Meier et al.   GENOME RESEARCH

The Conflict Between Cell Proliferation and Expansion Primarily Affects Stem Organogenesis in Arabidopsis

(2014) Saori Maeda et al.   PLANT AND CELL PHYSIOLOGY

Genomic stability in response to high versus low linear energy transfer radiation in Arabidopsis thaliana

(2014) Neil D. Huefner et al.   Frontiers in Plant Science

The type of mutations induced by carbon-ion-beam irradiation of the filamentous fungus Neurospora crassa

(2013) Liqiu Ma et al.   Fungal Biology

MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice

(2013) Rym Fekih et al.   PLoS One

DNA damage response in male gametes of Cyrtanthus mackenii during pollen tube growth

(2013) T. Hirano et al.   AoB Plants

Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing

(2012) N. Obholzer et al.   DEVELOPMENT

CloudMap: A Cloud-Based Pipeline for Analysis of Mutant Genome Sequences

(2012) Gregory Minevich et al.   GENETICS

Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana

(2012) E. J. Belfield et al.   GENOME RESEARCH

Molecular nature of mutations induced by high-LET irradiation with argon and carbon ions in Arabidopsis thaliana

(2012) Tomonari Hirano et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Novel Smad proteins localize to IR-induced double-strand breaks: interplay between TGFβ and ATM pathways

(2012) Minli Wang et al.   NUCLEIC ACIDS RESEARCH

Characterization of a heavy-ion induced white flower mutant of allotetraploid Nicotiana tabacum

(2012) Yusuke Kazama et al.   PLANT CELL REPORTS

Mutation in Torenia fournieri Lind. UFO homolog confers loss of TfLFY interaction and results in a petal to sepal transformation

(2012) Katsutomo Sasaki et al.   PLANT JOURNAL

S-LOCUS EARLY FLOWERING 3 Is Exclusively Present in the Genomes of Short-Styled Buckwheat Plants that Exhibit Heteromorphic Self-Incompatibility

(2012) Yasuo Yasui et al.   PLoS One

Characterization of highly efficient heavy-ion mutagenesis in Arabidopsis thaliana

(2011) Yusuke Kazama et al.   BMC PLANT BIOLOGY

Efficient Mapping and Cloning of Mutations in Zebrafish by Low-Coverage Whole-Genome Sequencing

(2011) M. E. Bowen et al.   GENETICS

Mutagenic effects of carbon ions near the range end in plants

(2011) Yoshihiro Hase et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Identification of EMS-Induced Causal Mutations in a Non-Reference Arabidopsis thaliana Accession by Whole Genome Sequencing

(2011) N. Uchida et al.   PLANT AND CELL PHYSIOLOGY

LET-dependent effects of heavy-ion beam irradiation in Arabidopsis thaliana

(2011) Yusuke Kazama et al.   Plant Biotechnology

Next-generation mapping of Arabidopsis genes

(2011) Ryan S. Austin et al.   PLANT JOURNAL

Comparison of RBE values of high- LET α-particles for the induction of DNA-DSBs, chromosome aberrations and cell reproductive death

(2011) Nicolaas AP Franken et al.   Radiation Oncology

Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis

(2011) Kevin Ashelford et al.   GENOME BIOLOGY

Whole-Genome Profiling of Mutagenesis in Caenorhabditis elegans

(2010) S. Flibotte et al.   GENETICS

Studies on Biological Effects of Ion Beams on Lethality, Molecular Nature of Mutation, Mutation Rate, and Spectrum of Mutation Phenotype for Mutation Breeding in Higher Plants

(2010) Atsushi TANAKA et al.   JOURNAL OF RADIATION RESEARCH

A Monte Carlo Study of the Radiation Quality Dependence of DNA Fragmentation Spectra

(2010) D. Alloni et al.   RADIATION RESEARCH

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

SHOREmap: simultaneous mapping and mutation identification by deep sequencing

(2009) Korbinian Schneeberger et al.   NATURE METHODS

Method to eliminate linear DNA from mixture containing nicked circular, supercoiled, and linear plasmid DNA

(2008) Pichumani Balagurumoorthy et al.   ANALYTICAL BIOCHEMISTRY

The Ku-dependent non-homologous end-joining but not other repair pathway is inhibited by high linear energy transfer ionizing radiation

(2008) Hongyan Wang et al.   DNA REPAIR

Heavy-ion effects: from track structure to DNA and chromosome damage

(2008) F Ballarini et al.   NEW JOURNAL OF PHYSICS

MMEJ repair of double-strand breaks (director’s cut): deleted sequences and alternative endings

(2008) Mitch McVey et al.   TRENDS IN GENETICS