Comprehensive identification of mutations induced by heavy-ion beam irradiation inArabidopsis thaliana

Effect of high-LET Fe-ion beam irradiation on mutation induction in Arabidopsis thaliana

(2015) Yusuke Kazama et al.   GENES & GENETIC SYSTEMS

Microarray-based ultra-high resolution discovery of genomic deletion mutations

(2014) Eric J Belfield et al.   BMC GENOMICS

Alternative end-joining pathway(s): Bricolage at DNA breaks

(2014) Philippe Frit et al.   DNA REPAIR

Decoding complex patterns of genomic rearrangement in hepatocellular carcinoma

(2014) Julio Fernandez-Banet et al.   GENOMICS

Chromatin structure and radiation-induced DNA damage: From structural biology to radiobiology

(2014) Christophe Lavelle et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Requirement for Parp-1 and DNA ligases 1 or 3 but not of Xrcc1 in chromosomal translocation formation by backup end joining

(2014) Aashish Soni et al.   NUCLEIC ACIDS RESEARCH

Modernizing the Nonhomologous End-Joining Repertoire: Alternative and Classical NHEJ Share the Stage

(2013) Ludovic Deriano et al.   Annual Review of Genetics

Track structure based modelling of chromosome aberrations after photon and alpha-particle irradiation

(2013) Werner Friedland et al.   MUTATION RESEARCH-GENETIC TOXICOLOGY AND ENVIRONMENTAL MUTAGENESIS

GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana

(2013) Cordelia Bolle et al.   PLANT JOURNAL

Hidden genetic nature of epigenetic natural variation in plants

(2013) Ales Pecinka et al.   TRENDS IN PLANT SCIENCE

A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common bean cultivar

(2013) Jamie A. O'Rourke et al.   Frontiers in Plant Science

Alternative end-joining mechanisms: a historical perspective

(2013) Anabelle Decottignies   Frontiers in Genetics

Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana

(2012) E. J. Belfield et al.   GENOME RESEARCH

Molecular nature of mutations induced by high-LET irradiation with argon and carbon ions in Arabidopsis thaliana

(2012) Tomonari Hirano et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Rapid evaluation of effective linear energy transfer in heavy-ion mutagenesis of Arabidopsis thaliana

(2012) Yusuke Kazama et al.   Plant Biotechnology

Detection of copy number variations in rice using array-based comparative genomic hybridization

(2011) Ping Yu et al.   BMC GENOMICS

Characterization of highly efficient heavy-ion mutagenesis in Arabidopsis thaliana

(2011) Yusuke Kazama et al.   BMC PLANT BIOLOGY

Perspectives on Systematic Analyses of Gene Function in Arabidopsis thaliana: New Tools, Topics and Trends

(2011) C. Bolle et al.   CURRENT GENOMICS

Kinetic analysis of DNA double-strand break repair pathways in Arabidopsis

(2011) Cyril Charbonnel et al.   DNA REPAIR

Mutagenic effects of carbon ions near the range end in plants

(2011) Yoshihiro Hase et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Identification of EMS-Induced Causal Mutations in a Non-Reference Arabidopsis thaliana Accession by Whole Genome Sequencing

(2011) N. Uchida et al.   PLANT AND CELL PHYSIOLOGY

Heavy-ion beam-induced sterile mutants of verbena (Verbena*hybrida) with an improved flowering habit

(2011) Takeshi Kanaya et al.   Plant Biotechnology

Heavy-ion beam irradiation facility for biological samples in RIKEN

(2011) Hiromichi Ryuto et al.   Plant Biotechnology

LET-dependent effects of heavy-ion beam irradiation in Arabidopsis thaliana

(2011) Yusuke Kazama et al.   Plant Biotechnology

Next-generation mapping of Arabidopsis genes

(2011) Ryan S. Austin et al.   PLANT JOURNAL

DNA Ligase III Promotes Alternative Nonhomologous End-Joining during Chromosomal Translocation Formation

(2011) Deniz Simsek et al.   PLoS Genetics

Molecular characterization of mutations induced by gamma irradiation in rice

(2010) Ryouhei Morita et al.   GENES & GENETIC SYSTEMS

Studies on Biological Effects of Ion Beams on Lethality, Molecular Nature of Mutation, Mutation Rate, and Spectrum of Mutation Phenotype for Mutation Breeding in Higher Plants

(2010) Atsushi TANAKA et al.   JOURNAL OF RADIATION RESEARCH

Mechanism of cluster DNA damage repair in response to high-atomic number and energy particles radiation

(2010) Aroumougame Asaithamby et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Clustered DNA lesion repair in eukaryotes: Relevance to mutagenesis and cell survival

(2010) Evelyne Sage et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Alternative end-joining is suppressed by the canonical NHEJ component Xrcc4–ligase IV during chromosomal translocation formation

(2010) Deniz Simsek et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Characteristics of DNA-binding proteins determine the biological sensitivity to high-linear energy transfer radiation

(2010) H. Wang et al.   NUCLEIC ACIDS RESEARCH

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

(2009) K. Ye et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

SHOREmap: simultaneous mapping and mutation identification by deep sequencing

(2009) Korbinian Schneeberger et al.   NATURE METHODS

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

(2009) Ken Chen et al.   NATURE METHODS

A Phosphofructokinase B-Type Carbohydrate Kinase Family Protein, NARA5, for Massive Expressions of Plastid-Encoded Photosynthetic Genes in Arabidopsis

(2009) T. Ogawa et al.   PLANT PHYSIOLOGY

Mutant Resources in Rice for Functional Genomics of the Grasses

(2009) A. Krishnan et al.   PLANT PHYSIOLOGY

The Ku-dependent non-homologous end-joining but not other repair pathway is inhibited by high linear energy transfer ionizing radiation

(2008) Hongyan Wang et al.   DNA REPAIR

Formation of Clustered DNA Damage after High-LET Irradiation: A Review

(2008) Megumi HADA et al.   JOURNAL OF RADIATION RESEARCH

AtMap1: a DNA microarray for genomic deletion mapping inArabidopsis thaliana

(2008) Atsushi J. Nagano et al.   PLANT JOURNAL

The Difference in LET and Ion Species Dependence for Induction of Initially Measured and Non-rejoined Chromatin Breaks in Normal Human Fibroblasts

(2008) Chizuru Tsuruoka et al.   RADIATION RESEARCH