sciCSR infers B cell state transition and predicts class-switch recombination dynamics using single-cell transcriptomic data
出版年份 2023 全文链接
标题
sciCSR infers B cell state transition and predicts class-switch recombination dynamics using single-cell transcriptomic data
作者
关键词
-
出版物
NATURE METHODS
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2023-11-07
DOI
10.1038/s41592-023-02060-1
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- PhyloVelo enhances transcriptomic velocity field mapping using monotonically expressed genes
- (2023) Kun Wang et al. NATURE BIOTECHNOLOGY
- Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells
- (2023) Adam Gayoso et al. NATURE METHODS
- Germinal centre-driven maturation of B cell response to mRNA vaccination
- (2022) Wooseob Kim et al. NATURE
- CellRank for directed single-cell fate mapping
- (2022) Marius Lange et al. NATURE METHODS
- Single-cell genomics identifies distinct B1 cell developmental pathways and reveals aging-related changes in the B-cell receptor repertoire
- (2022) Yao Luo et al. Cell and Bioscience
- Pandemic, Epidemic, Endemic: B Cell Repertoire Analysis Reveals Unique Anti-Viral Responses to SARS-CoV-2, Ebola and Respiratory Syncytial Virus
- (2022) Alexander Stewart et al. Frontiers in Immunology
- The humoral response and antibodies against SARS-CoV-2 infection
- (2022) Hai Qi et al. NATURE IMMUNOLOGY
- Single-cell profiling of the antigen-specific response to BNT162b2 SARS-CoV-2 RNA vaccine
- (2022) Kevin J. Kramer et al. Nature Communications
- Single cell clonal analysis identifies an AID ‐dependent pathway of plasma cell differentiation
- (2022) Carmen Gómez‐Escolar et al. EMBO REPORTS
- Lineage tracing reveals B cell antibody class switching is stochastic, cell-autonomous, and tuneable
- (2022) Miles B. Horton et al. IMMUNITY
- Single-cell analysis of human B cell maturation predicts how antibody class switching shapes selection dynamics
- (2021) Hamish W. King et al. Science Immunology
- Single-cell multi-omics analysis of the immune response in COVID-19
- (2021) Emily Stephenson et al. NATURE MEDICINE
- Pseudocell Tracer—A method for inferring dynamic trajectories using scRNAseq and its application to B cells undergoing immunoglobulin class switch recombination
- (2021) Derek Reiman et al. PLoS Computational Biology
- Single-Cell Transcriptomic Analyses Define Distinct Peripheral B Cell Subsets and Discrete Development Pathways
- (2021) Alexander Stewart et al. Frontiers in Immunology
- Integrated analysis of multimodal single-cell data
- (2021) Yuhan Hao et al. CELL
- RNA velocity—current challenges and future perspectives
- (2021) Volker Bergen et al. Molecular Systems Biology
- Single-cell BCR and transcriptome analysis after influenza infection reveals spatiotemporal dynamics of antigen-specific B cells
- (2021) Nimitha R. Mathew et al. Cell Reports
- Integrated single-cell transcriptomics and epigenomics reveals strong germinal center–associated etiology of autoimmune risk loci
- (2021) Hamish W. King et al. Science Immunology
- Single-cell transcriptional diversity is a hallmark of developmental potential
- (2020) Gunsagar S. Gulati et al. SCIENCE
- Lineage tracing meets single-cell omics: opportunities and challenges
- (2020) Daniel E. Wagner et al. NATURE REVIEWS GENETICS
- Longitudinal Isolation of Potent Near-Germline SARS-CoV-2-Neutralizing Antibodies from COVID-19 Patients
- (2020) Christoph Kreer et al. CELL
- An Integrated Multi-omic Single-Cell Atlas of Human B Cell Identity
- (2020) David R. Glass et al. IMMUNITY
- IL-23 Promotes a Coordinated B Cell Germinal Center Program for Class-Switch Recombination to IgG2b in BXD2 Mice
- (2020) Huixian Hong et al. JOURNAL OF IMMUNOLOGY
- Generalizing RNA velocity to transient cell states through dynamical modeling
- (2020) Volker Bergen et al. NATURE BIOTECHNOLOGY
- Characterization of cell fate probabilities in single-cell data with Palantir
- (2019) Manu Setty et al. NATURE BIOTECHNOLOGY
- B Cell Responses: Cell Interaction Dynamics and Decisions
- (2019) Jason G. Cyster et al. CELL
- Class-Switch Recombination Occurs Infrequently in Germinal Centers
- (2019) Jonathan A. Roco et al. IMMUNITY
- Conformational and Dynamical Effects of Tyr32 Phosphorylation in K-Ras: Molecular Dynamics Simulation and Markov State Models Analysis
- (2019) Mohammed Khaled et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
- (2019) Daehwan Kim et al. NATURE BIOTECHNOLOGY
- Fast, sensitive and accurate integration of single-cell data with Harmony
- (2019) Ilya Korsunsky et al. NATURE METHODS
- Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
- (2018) Kelly Street et al. BMC GENOMICS
- RNA velocity of single cells
- (2018) Gioele La Manno et al. NATURE
- SCENIC: single-cell regulatory network inference and clustering
- (2017) Sara Aibar et al. NATURE METHODS
- Reversed graph embedding resolves complex single-cell trajectories
- (2017) Xiaojie Qiu et al. NATURE METHODS
- Intrinsic transcriptional heterogeneity in B cells controls early class switching to IgE
- (2016) Yee Ling Wu et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Transition path theory analysis of c-Src kinase activation
- (2016) Yilin Meng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Polyester: simulating RNA-seq datasets with differential transcript expression
- (2015) Alyssa C. Frazee et al. BIOINFORMATICS
- PyEMMA 2: A Software Package for Estimation, Validation, and Analysis of Markov Models
- (2015) Martin K. Scherer et al. Journal of Chemical Theory and Computation
- IgH Chain Class Switch Recombination: Mechanism and Regulation
- (2014) Janet Stavnezer et al. JOURNAL OF IMMUNOLOGY
- IgBLAST: an immunoglobulin variable domain sequence analysis tool
- (2013) Jian Ye et al. NUCLEIC ACIDS RESEARCH
- Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads
- (2012) Wei Li et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- The Role of Germline Promoters and I Exons in Cytokine-Induced Gene-Specific Class Switch Recombination
- (2010) W. A. Dunnick et al. JOURNAL OF IMMUNOLOGY
- The transmembrane activator TACI triggers immunoglobulin class switching by activating B cells through the adaptor MyD88
- (2010) Bing He et al. NATURE IMMUNOLOGY
- Transition Path Theory for Markov Jump Processes
- (2009) Philipp Metzner et al. MULTISCALE MODELING & SIMULATION
- Transition-Path Theory and Path-Finding Algorithms for the Study of Rare Events
- (2008) Weinan E et al. Annual Review of Physical Chemistry
- IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis
- (2008) X. Brochet et al. NUCLEIC ACIDS RESEARCH
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now