标题
Polyester: simulating RNA-seq datasets with differential transcript expression
作者
关键词
-
出版物
BIOINFORMATICS
Volume 31, Issue 17, Pages 2778-2784
出版商
Oxford University Press (OUP)
发表日期
2015-04-30
DOI
10.1093/bioinformatics/btv272
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Ballgown bridges the gap between transcriptome assembly and expression analysis
- (2015) Alyssa C Frazee et al. NATURE BIOTECHNOLOGY
- IVT-seq reveals extreme bias in RNA sequencing
- (2014) Nicholas F Lahens et al. GENOME BIOLOGY
- Transcriptome and genome sequencing uncovers functional variation in humans
- (2013) Tuuli Lappalainen et al. NATURE
- Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories
- (2013) Peter A C 't Hoen et al. NATURE BIOTECHNOLOGY
- Differential abundance analysis for microbial marker-gene surveys
- (2013) Joseph N Paulson et al. NATURE METHODS
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
- Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads
- (2012) Wei Li et al. BIOINFORMATICS
- Removing technical variability in RNA-seq data using conditional quantile normalization
- (2012) K. D. Hansen et al. BIOSTATISTICS
- Accuracy of RNA-Seq and its dependence on sequencing depth
- (2012) Guoshuai Cai et al. BMC BIOINFORMATICS
- GemSIM: general, error-model based simulator of next-generation sequencing data
- (2012) Kerensa E McElroy et al. BMC GENOMICS
- Differential analysis of gene regulation at transcript resolution with RNA-seq
- (2012) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Modelling and simulating generic RNA-Seq experiments with the flux simulator
- (2012) Thasso Griebel et al. NUCLEIC ACIDS RESEARCH
- Summarizing and correcting the GC content bias in high-throughput sequencing
- (2012) Yuval Benjamini et al. NUCLEIC ACIDS RESEARCH
- Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)
- (2011) Gregory R. Grant et al. BIOINFORMATICS
- GC-Content Normalization for RNA-Seq Data
- (2011) Davide Risso et al. BMC BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Design and validation issues in RNA-seq experiments
- (2011) Z. Fang et al. BRIEFINGS IN BIOINFORMATICS
- From RNA-seq reads to differential expression results
- (2011) Alicia Oshlack et al. GENOME BIOLOGY
- Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
- (2010) James H Bullard et al. BMC BIOINFORMATICS
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Biases in Illumina transcriptome sequencing caused by random hexamer priming
- (2010) Kasper D. Hansen et al. NUCLEIC ACIDS RESEARCH
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
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