Genomic Insight Into Lacticaseibacillus paracasei SP5, Reveals Genes and Gene Clusters of Probiotic Interest and Biotechnological Potential

SignalP 6.0 predicts all five types of signal peptides using protein language models

(2022) Felix Teufel et al.   NATURE BIOTECHNOLOGY

Isolation, characterization and comparative genomics of potentially probiotic Lactiplantibacillus plantarum strains from Indian foods

(2022) Sarvesh Surve et al.   Scientific Reports

A novel bacteriocin against Staphylococcus aureus from Lactobacillus paracasei isolated from Yunnan traditional fermented yogurt: Purification, antibacterial characterization, and antibiofilm activity

(2022) Yu-Hang Jiang et al.   JOURNAL OF DAIRY SCIENCE

Safety and tolerance of Lacticaseibacillus paracasei N1115 in caesarean-born young children: a randomised, placebo-controlled trial

(2022) Z. Ren et al.   Beneficial Microbes

Pro-biomics: Omics Technologies To Unravel the Role of Probiotics in Health and Disease

(2021) Despoina Eugenia Kiousi et al.   Advances in Nutrition

Whole-genome analysis of probiotic product isolates reveals the presence of genes related to antimicrobial resistance, virulence factors, and toxic metabolites, posing potential health risks

(2021) Ying Wang et al.   BMC GENOMICS

Metabolism Characteristics of Lactic Acid Bacteria and the Expanding Applications in Food Industry

(2021) Yaqi Wang et al.   Frontiers in Bioengineering and Biotechnology

Effect of Lacticaseibacillus paracasei Strain Shirota on Improvement in Depressive Symptoms, and Its Association with Abundance of Actinobacteria in Gut Microbiota

(2021) Machiko Otaka et al.   Microorganisms

Microbiological and Chemical Properties of Chokeberry Juice Fermented by Novel Lactic Acid Bacteria with Potential Probiotic Properties during Fermentation at 4 °C for 4 Weeks

(2021) Christos Bontsidis et al.   Foods

Bacteria autoaggregation: how and why bacteria stick together

(2021) El-shama Q. A. Nwoko et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Characterization of a bacterial strain Lactobacillus paracasei LP10266 recovered from an endocarditis patient in Shandong, China

(2021) Qi Tang et al.   BMC MICROBIOLOGY

Regulatory Mechanisms of L-Lactic Acid and Taste Substances in Chinese Acid Rice Soup (Rice-Acid) Fermented With a Lacticaseibacillus paracasei and Kluyveromyces marxianus

(2021) Na Liu et al.   Frontiers in Microbiology

White Brined Cheese Production by Incorporation of a Traditional Milk-Cereal Prebiotic Matrix with a Candidate Probiotic Bacterial Strain

(2021) Stavros Plessas et al.   Applied Sciences-Basel

Transformation of Inferior Tomato into Preservative: Fermentation by Multi-Bacteriocin Producing Lactobacillus paracasei WX322

(2021) Rong Zhu et al.   Foods

Whole-Genome Sequencing, Phylogenetic and Genomic Analysis of Lactiplantibacillus pentosus L33, a Potential Probiotic Strain Isolated From Fermented Sausages

(2021) Odysseas Sotirios Stergiou et al.   Frontiers in Microbiology

Genomic and Phylogenetic Analysis of Lactiplantibacillus plantarum L125, and Evaluation of Its Anti-Proliferative and Cytotoxic Activity in Cancer Cells

(2021) Konstantinos Tegopoulos et al.   Biomedicines

Prolonged heat stress of Lactobacillus paracasei GCRL163 improves binding to human colorectal adenocarcinoma HT-29 cells and modulates the relative abundance of secreted and cell-surface located proteins

(2020) Kayode T. Adu et al.   JOURNAL OF PROTEOME RESEARCH

Milk Fermented by Lactobacillus paracasei NCC 2461 (ST11) Modulates the Immune Response and Microbiota to Exert its Protective Effects Against Salmonella typhimurium Infection in Mice

(2020) Leonardo Borges Acurcio et al.   Probiotics and Antimicrobial Proteins

A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae

(2020) Jinshui Zheng et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Yogurts enriched with milk proteins: Texture properties, aroma release and sensory perception

(2020) Hanna Lesme et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

VanZ Reduces the Binding of Lipoglycopeptide Antibiotics to Staphylococcus aureus and Streptococcus pneumoniae Cells

(2020) Vladimir Vimberg et al.   Frontiers in Microbiology

Assessment of the Immunomodulatory Properties of the Probiotic Strain Lactobacillus paracasei K5 In Vitro and In Vivo

(2020) Pelagia Chondrou et al.   Microorganisms

ResFinder 4.0 for predictions of phenotypes from genotypes

(2020) Valeria Bortolaia et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

In silico Genotyping of Escherichia coli Isolates for Extraintestinal Virulence Genes by Use of Whole-Genome Sequencing Data

(2020) Anna Maria Malberg Tetzschner et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Transcriptome analysis of Lactobacillus paracasei SMN-LBK under ethanol stress

(2020) Jinfeng Guo et al.   JOURNAL OF DAIRY SCIENCE

Lactobacillus paracasei 4341 as adjunct culture to enhance flavor in short ripened Caciotta-type cheese

(2020) Elena Bancalari et al.   FOOD RESEARCH INTERNATIONAL

Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder

(2020) Markus H K Johansson et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Probiotics as an alternative antimicrobial therapy: Current reality and future directions

(2020) Diego Romário Silva et al.   Journal of Functional Foods

Oxidative stress tolerance and antioxidant capacity of lactic acid bacteria as probiotic: a systematic review

(2020) Tao Feng et al.   Gut Microbes

Characterization of Highly Mucus-Adherent Non-GMO Derivatives of Lacticaseibacillus rhamnosus GG

(2020) Pia Rasinkangas et al.   Frontiers in Bioengineering and Biotechnology

New Bacteriocins from Lacticaseibacillus paracasei CNCM I-5369 Adsorbed on Alginate Nanoparticles Are Very Active against Escherichia coli

(2020) Yanath Belguesmia et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Rice flour fermented with Lactobacillus paracasei CBA L74 in the treatment of atopic dermatitis in infants: A randomized, double- blind, placebo- controlled trial

(2020) Enza D’Auria et al.   PHARMACOLOGICAL RESEARCH

Isolation of a Lactobacillus paracasei Strain with Probiotic Attributes from Kefir Grains

(2020) Stavros Plessas et al.   Biomedicines

Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut

(2019) Xiaofang Jiang et al.   SCIENCE

Bacteriocin production and adhesion properties as mechanisms for the anti-listerial activity of Lactobacillus plantarum 423 and Enterococcus mundtii ST4SA

(2019) W.F. van Zyl et al.   Beneficial Microbes

Assessment of the probiotic potential of lactic acid bacteria isolated from kefir grains: evaluation of adhesion and antiproliferative properties in in vitro experimental systems

(2019) Ioanna Mantzourani et al.   ANNALS OF MICROBIOLOGY

Crystal structure of basal pilin SpaE reveals the molecular basis of its incorporation in the lactobacillar SpaFED pilus

(2019) Abhin Kumar Megta et al.   JOURNAL OF STRUCTURAL BIOLOGY

Adhesion mechanisms of lactic acid bacteria: conventional and novel approaches for testing

(2019) Duygu Alp et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Functional pomegranate beverage production by fermentation with a novel synbiotic L. paracasei biocatalyst

(2019) Ioanna Mantzourani et al.   FOOD CHEMISTRY

Simulated gastrointestinal conditions increase adhesion ability of Lactobacillus paracasei strains isolated from kefir to Caco-2 cells and mucin

(2018) Ana Agustina Bengoa et al.   FOOD RESEARCH INTERNATIONAL

Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI

(2018) Stacy Ciufo et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

On the Origin of Isoprenoid Biosynthesis

(2018) Yosuke Hoshino et al.   MOLECULAR BIOLOGY AND EVOLUTION

BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins

(2018) Auke J van Heel et al.   NUCLEIC ACIDS RESEARCH

dbCAN2: a meta server for automated carbohydrate-active enzyme annotation

(2018) Han Zhang et al.   NUCLEIC ACIDS RESEARCH

Evaluation of the Biogenic Amines Formation and Degradation Abilities of Lactobacillus curvatus From Chinese Bacon

(2018) Lu Li et al.   Frontiers in Microbiology

The Genus Enterococcus: Between Probiotic Potential and Safety Concerns—An Update

(2018) Hasna Hanchi et al.   Frontiers in Microbiology

The Lactobacillus casei Group: History and Health Related Applications

(2018) Daragh Hill et al.   Frontiers in Microbiology

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Conversion of Methionine to Cysteine in Lactobacillus paracasei Depends on the Highly Mobile cysK-ctl-cysE Gene Cluster

(2018) Daniel Wüthrich et al.   Frontiers in Microbiology

Genetic Signatures of Dairy Lactobacillus casei Group

(2018) Alessandra Fontana et al.   Frontiers in Microbiology

Protein moonlighting: what is it, and why is it important?

(2017) Constance J. Jeffery   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Potentially probiotic Lactobacillus strains with anti-proliferative activity induce cytokine/chemokine production and neutrophil recruitment in mice

(2017) G. Saxami et al.   Beneficial Microbes

Extensive horizontal gene transfer in cheese-associated bacteria

(2017) Kevin S Bonham et al.   eLife

The surface-displayed chaperones GroEL and DnaK of Mycoplasma pneumoniae interact with human plasminogen and components of the extracellular matrix

(2017) Lisa Hagemann et al.   Pathogens and Disease

Potential Effects of Horizontal Gene Exchange in the Human Gut

(2017) Aaron Lerner et al.   Frontiers in Immunology

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

(2016) Leighton Pritchard et al.   Analytical Methods

Cloning, expression and characterization of a mucin-binding GAPDH from Lactobacillus acidophilus

(2016) Dhaval K Patel et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

The response of foodborne pathogens to osmotic and desiccation stresses in the food chain

(2016) Catherine M. Burgess et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Mechanism of pH-dependent activation of the sodium-proton antiporter NhaA

(2016) Yandong Huang et al.   Nature Communications

From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer

(2016) Aaron Weimann et al.   mSystems

A Genomic View of Lactobacilli and Pediococci Demonstrates that Phylogeny Matches Ecology and Physiology

(2015) Jinshui Zheng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The CRISPR-Cas immune system: Biology, mechanisms and applications

(2015) Devashish Rath et al.   BIOCHIMIE

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Genomic and Functional Characterization of the Unusual pLOCK 0919 Plasmid Harboring thespaCBAPili Cluster inLactobacillus caseiLOCK 0919

(2015) Tamara Aleksandrzak-Piekarczyk et al.   Genome Biology and Evolution

Tolerance of Lactobacillus casei, Lactobacillus paracasei and Lactobacillus rhamnosus strains to stress factors encountered in food processing and in the gastro-intestinal tract

(2015) Anna Reale et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota

(2015) David J. Roach et al.   PLoS Genetics

The effect of moonlighting proteins on the adhesion and aggregation ability of Lactobacillus helveticus

(2014) Adam Waśko et al.   ANAEROBE

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Efficacy and safety of the probiotic Lactobacillus paracasei LP-33 in allergic rhinitis: a double-blind, randomized, placebo-controlled trial (GA2LEN Study)

(2014) D J Costa et al.   EUROPEAN JOURNAL OF CLINICAL NUTRITION

Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

(2014) K. G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic

(2014) Colin Hill et al.   Nature Reviews Gastroenterology & Hepatology

Novel LanT Associated Lantibiotic Clusters Identified by Genome Database Mining

(2014) Mangal Singh et al.   PLoS One

Phenotypical Analysis of the Lactobacillus rhamnosus GG Fimbrial spaFED Operon: Surface Expression and Functional Characterization of Recombinant SpaFED Pili in Lactococcus lactis

(2014) Johanna Rintahaka et al.   PLoS One

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Lactobacillus paracasei Comparative Genomics: Towards Species Pan-Genome Definition and Exploitation of Diversity

(2013) Tamara Smokvina et al.   PLoS One

PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data

(2013) Salvatore Cosentino et al.   PLoS One

Characterization of the SpaCBA Pilus Fibers in the Probiotic Lactobacillus rhamnosus GG

(2012) Justus Reunanen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Suitability of a probiotic Lactobacillus paracasei strain as a starter culture in olive fermentation and development of the innovative patented product “probiotic table olives”

(2012) Angelo Sisto et al.   Frontiers in Microbiology

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Comparative Genomics of Bifidobacterium, Lactobacillus and Related Probiotic Genera

(2011) Oksana Lukjancenko et al.   MICROBIAL ECOLOGY

Evolutionary transitions in bacterial symbiosis

(2011) J. L. Sachs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional Analysis of the p40 and p75 Proteins from Lactobacillus casei BL23

(2010) Christine Bäuerl et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1

(2010) J. M. Macklaim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In Silico Prediction of Horizontal Gene Transfer Events in Lactobacillus bulgaricus and Streptococcus thermophilus Reveals Protocooperation in Yogurt Manufacturing

(2009) M. Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS