标题
Genome-Scale Metabolic Modeling Enables In-Depth Understanding of Big Data
作者
关键词
-
出版物
Metabolites
Volume 12, Issue 1, Pages 14
出版商
MDPI AG
发表日期
2021-12-27
DOI
10.3390/metabo12010014
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Model reduction of genome-scale metabolic models as a basis for targeted kinetic models
- (2021) R.P. van Rosmalen et al. METABOLIC ENGINEERING
- Understanding the host-microbe interactions using metabolic modeling
- (2021) Jack Jansma et al. Microbiome
- Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens
- (2021) Akanksha Rajput et al. mSystems
- Integrative computational approach identifies drug targets in CD4+ T-cell-mediated immune disorders
- (2021) Bhanwar Lal Puniya et al. npj Systems Biology and Applications
- A genome‐scale metabolic network model and machine learning predict amino acid concentrations in Chinese Hamster Ovary cell cultures
- (2021) Song‐Min Schinn et al. BIOTECHNOLOGY AND BIOENGINEERING
- Machine learning applied for metabolic flux‐based control of micro‐aerated fermentations in bioreactors
- (2021) Thiago José Barbosa Mesquita et al. BIOTECHNOLOGY AND BIOENGINEERING
- The sum is greater than the parts: exploiting microbial communities to achieve complex functions
- (2021) Livia S Zaramela et al. CURRENT OPINION IN BIOTECHNOLOGY
- Omics in gut microbiome analysis
- (2021) Tae Woong Whon et al. JOURNAL OF MICROBIOLOGY
- Towards complete and error-free genome assemblies of all vertebrate species
- (2021) Arang Rhie et al. NATURE
- Genome-scale metabolic model of the diatom Thalassiosira pseudonana highlights the importance of nitrogen and sulfur metabolism in redox balance
- (2021) Helena M. van Tol et al. PLoS One
- Yeast optimizes metal utilization based on metabolic network and enzyme kinetics
- (2021) Yu Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Simultaneous Integration of Gene Expression and Nutrient Availability for Studying the Metabolism of Hepatocellular Carcinoma Cell Lines
- (2021) Ewelina Weglarz-Tomczak et al. Biomolecules
- Analysis of the cyanobacterial amino acid metabolism with a precise genome-scale metabolic reconstruction of Anabaena sp. UTEX 2576
- (2021) Daniel A. Norena-Caro et al. BIOCHEMICAL ENGINEERING JOURNAL
- Biotechnology for secure biocontainment designs in an emerging bioeconomy
- (2021) Kathleen L Arnolds et al. CURRENT OPINION IN BIOTECHNOLOGY
- Kinetic, metabolic, and statistical analytics: addressing metabolic transport limitations among organelles and microbial communities
- (2021) Cristal Zuniga et al. CURRENT OPINION IN BIOTECHNOLOGY
- Setup of a scientific computing environment for computational biology: Simulation of a genome-scale metabolic model of Escherichia coli as an example
- (2020) Junhyeok Jeon et al. JOURNAL OF MICROBIOLOGY
- MEMOTE for standardized genome-scale metabolic model testing
- (2020) Christian Lieven et al. NATURE BIOTECHNOLOGY
- Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine Learning
- (2020) Gregory L. Medlock et al. Cell Systems
- Towards the routine use of in silico screenings for drug discovery using metabolic modelling
- (2020) Tamara Bintener et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- A biochemically-interpretable machine learning classifier for microbial GWAS
- (2020) Erol S. Kavvas et al. Nature Communications
- Network-based metabolic characterization of renal cell carcinoma
- (2020) Nishtha Pandey et al. Scientific Reports
- Genome-Scale Metabolic Modeling of Glioblastoma Reveals Promising Targets for Drug Development
- (2020) Ida Larsson et al. Frontiers in Genetics
- SDN2GO: An Integrated Deep Learning Model for Protein Function Prediction
- (2020) Yideng Cai et al. Frontiers in Bioengineering and Biotechnology
- Dynamic Flux Balance Analysis to Evaluate the Strain Production Performance on Shikimic Acid Production in Escherichia coli
- (2020) Yuki Kuriya et al. Metabolites
- Genome scale metabolic models and analysis for evaluating probiotic potentials
- (2020) Yoon-Mi Choi et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- A mechanism-aware and multiomic machine-learning pipeline characterizes yeast cell growth
- (2020) Christopher Culley et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MetaRibo-Seq measures translation in microbiomes
- (2020) Brayon J. Fremin et al. Nature Communications
- Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth
- (2020) Cristal Zuñiga et al. Nature Communications
- Machine learning: A powerful tool for gene function prediction in plants
- (2020) Elizabeth H. Mahood et al. Applications in Plant Sciences
- Dynamic resource allocation drives growth under nitrogen starvation in eukaryotes
- (2020) Juan D. Tibocha-Bonilla et al. npj Systems Biology and Applications
- Linking metabolic phenotypes to pathogenic traits among “Candidatus Liberibacter asiaticus” and its hosts
- (2020) Cristal Zuñiga et al. npj Systems Biology and Applications
- Genome-scale metabolic modelling predicts biomarkers and therapeutic targets for neuropsychiatric disorders
- (2020) S.T.R. Moolamalla et al. COMPUTERS IN BIOLOGY AND MEDICINE
- Reconstructing organisms in silico: genome-scale models and their emerging applications
- (2020) Xin Fang et al. NATURE REVIEWS MICROBIOLOGY
- The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
- (2020) Samuel M D Seaver et al. NUCLEIC ACIDS RESEARCH
- Database resources of the National Center for Biotechnology Information
- (2020) Eric W Sayers et al. NUCLEIC ACIDS RESEARCH
- The Era of Big Data: Genome-scale Modelling meets Machine Learning
- (2020) Athanasios Antonakoudis et al. Computational and Structural Biotechnology Journal
- Genome-Scale Metabolic Model of the Human Pathogen Candida albicans: A Promising Platform for Drug Target Prediction
- (2020) Romeu Viana et al. Journal of Fungi
- Helixer: Cross-species gene annotation of large eukaryotic genomes using deep learning
- (2020) Felix Stiehler et al. BIOINFORMATICS
- A guide to metabolic flux analysis in metabolic engineering: Methods, tools and applications
- (2020) Maciek R. Antoniewicz METABOLIC ENGINEERING
- The Expanding Computational Toolbox for Engineering Microbial Phenotypes at the Genome Scale
- (2020) Daniel Craig Zielinski et al. Microorganisms
- ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species
- (2020) Eileen Marie Hanna et al. Frontiers in Molecular Biosciences
- Cross-compartment metabolic coupling enables flexible photoprotective mechanisms in the diatom Phaeodactylum tricornutum
- (2019) Jared T. Broddrick et al. NEW PHYTOLOGIST
- A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types
- (2019) Yara Seif et al. PLoS Computational Biology
- Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen
- (2019) Joanne K. Liu et al. PLoS Computational Biology
- Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
- (2019) Laurent Heirendt et al. Nature Protocols
- SignalP 5.0 improves signal peptide predictions using deep neural networks
- (2019) José Juan Almagro Armenteros et al. NATURE BIOTECHNOLOGY
- The Integrative Human Microbiome Project
- (2019) NATURE
- Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions
- (2019) Anne Richelle et al. PLoS Computational Biology
- Comparative Genome-Scale Metabolic Modeling of Metallo-Beta-Lactamase–Producing Multidrug-Resistant Klebsiella pneumoniae Clinical Isolates
- (2019) Charles J. Norsigian et al. Frontiers in Cellular and Infection Microbiology
- Approaches to Computational Strain Design in the Multiomics Era
- (2019) Peter C. St. John et al. Frontiers in Microbiology
- Disease networks and their contribution to disease understanding: A review of their evolution, techniques and data sources
- (2019) Eduardo P. García del Valle et al. JOURNAL OF BIOMEDICAL INFORMATICS
- Cellular responses to reactive oxygen species are predicted from molecular mechanisms
- (2019) Laurence Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Deep learning enables high-quality and high-throughput prediction of enzyme commission numbers
- (2019) Jae Yong Ryu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Modelling approaches for studying the microbiome
- (2019) Manish Kumar et al. Nature Microbiology
- Genomewide Assessment of Mycobacterium tuberculosis Conditionally Essential Metabolic Pathways
- (2019) Yusuke Minato et al. mSystems
- Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community
- (2019) Farhana R. Pinu et al. Metabolites
- Pan-cancer analysis of the metabolic reaction network
- (2019) F. Gatto et al. METABOLIC ENGINEERING
- Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates
- (2019) Livia S. Zaramela et al. Nature Microbiology
- The MetaCyc database of metabolic pathways and enzymes - a 2019 update
- (2019) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree
- (2019) Charles J Norsigian et al. NUCLEIC ACIDS RESEARCH
- A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
- (2019) Hongzhong Lu et al. Nature Communications
- Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities
- (2019) Cristal Zuñiga et al. Nature Microbiology
- Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology
- (2019) Peter D Karp et al. BRIEFINGS IN BIOINFORMATICS
- Deciphering the metabolic capabilities of Bifidobacteria using genome-scale metabolic models
- (2019) N. T. Devika et al. Scientific Reports
- Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli
- (2019) Bin Du et al. PLoS Computational Biology
- Recon3D enables a three-dimensional view of gene variation in human metabolism
- (2018) Elizabeth Brunk et al. NATURE BIOTECHNOLOGY
- Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
- (2018) Daniel Machado et al. NUCLEIC ACIDS RESEARCH
- PlantSEED Enables Automated Annotation and Reconstruction of Plant Primary Metabolism with Improved Compartmentalization and Comparative Consistency
- (2018) Samuel M. D. Seaver et al. PLANT JOURNAL
- Genome scale metabolic models as tools for drug design and personalized medicine
- (2018) Vytautas Raškevičius et al. PLoS One
- Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting
- (2018) Alyaa M. Abdel-Haleem et al. PLoS Computational Biology
- Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models
- (2018) Méziane Aite et al. PLoS Computational Biology
- COBRAme: A computational framework for genome-scale models of metabolism and gene expression
- (2018) Colton J. Lloyd et al. PLoS Computational Biology
- Advances in metabolic modeling of oleaginous microalgae
- (2018) Juan D. Tibocha-Bonilla et al. Biotechnology for Biofuels
- Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits
- (2018) Yara Seif et al. Nature Communications
- Diet Can Impact Microbiota Composition in Children With Autism Spectrum Disorder
- (2018) Kirsten Berding et al. Frontiers in Neuroscience
- Pan-genomic analysis provides novel insights into the association of E.coli with human host and its minimal genome
- (2018) Zhi-Kai Yang et al. BIOINFORMATICS
- Automated generation of genome-scale metabolic draft reconstructions based on KEGG
- (2018) Emil Karlsen et al. BMC BIOINFORMATICS
- RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
- (2018) Hao Wang et al. PLoS Computational Biology
- Dynamic flux balance analysis with nonlinear objective function
- (2017) Xiao Zhao et al. JOURNAL OF MATHEMATICAL BIOLOGY
- Genome scale metabolic modeling of cancer
- (2017) Avlant Nilsson et al. METABOLIC ENGINEERING
- Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints
- (2017) Benjamín J Sánchez et al. Molecular Systems Biology
- A communal catalogue reveals Earth’s multiscale microbial diversity
- (2017) Luke R. Thompson et al. NATURE
- iML1515, a knowledgebase that computes Escherichia coli traits
- (2017) Jonathan M Monk et al. NATURE BIOTECHNOLOGY
- Database resources of the National Center for Biotechnology Information
- (2017) et al. NUCLEIC ACIDS RESEARCH
- The Encyclopedia of DNA elements (ENCODE): data portal update
- (2017) Carrie A Davis et al. NUCLEIC ACIDS RESEARCH
- Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species
- (2017) Paul Julian Kersey et al. NUCLEIC ACIDS RESEARCH
- Predicting Dynamic Metabolic Demands in the Photosynthetic EukaryoteChlorella vulgaris
- (2017) Cristal Zuñiga et al. PLANT PHYSIOLOGY
- Model-based quantification of metabolic interactions from dynamic microbial-community data
- (2017) Mark Hanemaaijer et al. PLoS One
- Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation
- (2017) Ke Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BoostGAPFILL: improving the fidelity of metabolic network reconstructions through integrated constraint and pattern-based methods
- (2016) Tolutola Oyetunde et al. BIOINFORMATICS
- solveME: fast and reliable solution of nonlinear ME models
- (2016) Laurence Yang et al. BMC BIOINFORMATICS
- The international Genome sample resource (IGSR): A worldwide collection of genome variation incorporating the 1000 Genomes Project data
- (2016) Laura Clarke et al. NUCLEIC ACIDS RESEARCH
- Updates in Rhea – an expert curated resource of biochemical reactions
- (2016) Anne Morgat et al. NUCLEIC ACIDS RESEARCH
- TransportDB 2.0: a database for exploring membrane transporters in sequenced genomes from all domains of life
- (2016) Liam D. H. Elbourne et al. NUCLEIC ACIDS RESEARCH
- KEGG: new perspectives on genomes, pathways, diseases and drugs
- (2016) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Genome-Scale Metabolic Model for the Green Alga Chlorella vulgaris UTEX 395 Accurately Predicts Phenotypes under Autotrophic, Heterotrophic, and Mixotrophic Growth Conditions
- (2016) Cristal Zuñiga et al. PLANT PHYSIOLOGY
- Genome-Scale Model Reveals Metabolic Basis of Biomass Partitioning in a Model Diatom
- (2016) Jennifer Levering et al. PLoS One
- Comparative genome-scale modelling ofStaphylococcus aureusstrains identifies strain-specific metabolic capabilities linked to pathogenicity
- (2016) Emanuele Bosi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multi-omic data integration enables discovery of hidden biological regularities
- (2016) Ali Ebrahim et al. Nature Communications
- Applications of Genome-Scale Metabolic Models in Biotechnology and Systems Medicine
- (2016) Cheng Zhang et al. Frontiers in Physiology
- A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism
- (2016) Hooman Hefzi et al. Cell Systems
- The FAIR Guiding Principles for scientific data management and stewardship
- (2016) Mark D. Wilkinson et al. Scientific Data
- Genome-scale modelling of microbial metabolism with temporal and spatial resolution
- (2015) M. A. Henson BIOCHEMICAL SOCIETY TRANSACTIONS
- The SwissLipids knowledgebase for lipid biology
- (2015) Lucila Aimo et al. BIOINFORMATICS
- From big data analysis to personalized medicine for all: challenges and opportunities
- (2015) Akram Alyass et al. BMC Medical Genomics
- Investigating Moorella thermoacetica metabolism with a genome-scale constraint-based metabolic model
- (2015) M. Ahsanul Islam et al. Integrative Biology
- Chloroplast-targeting protein expression in the oleaginous diatom Fistulifera solaris JPCC DA0580 toward metabolic engineering
- (2015) Yoshihiko Sunaga et al. JOURNAL OF BIOSCIENCE AND BIOENGINEERING
- Multi -omics and metabolic modelling pipelines: Challenges and tools for systems microbiology
- (2015) Marco Fondi et al. MICROBIOLOGICAL RESEARCH
- MetaNetX/MNXref – reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks
- (2015) Sébastien Moretti et al. NUCLEIC ACIDS RESEARCH
- Reconstructing genome-scale metabolic models with merlin
- (2015) Oscar Dias et al. NUCLEIC ACIDS RESEARCH
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2015) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- BiGG Models: A platform for integrating, standardizing and sharing genome-scale models
- (2015) Zachary A. King et al. NUCLEIC ACIDS RESEARCH
- ENCODE data at the ENCODE portal
- (2015) Cricket A. Sloan et al. NUCLEIC ACIDS RESEARCH
- Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage
- (2015) Ansgar Gruber et al. PLANT JOURNAL
- A multi-tissue genome-scale metabolic modeling framework for the analysis of whole plant systems
- (2015) Cristiana Gomes de Oliveira Dal'Molin et al. Frontiers in Plant Science
- Pantograph: A template-based method for genome-scale metabolic model reconstruction
- (2015) Nicolas Loira et al. Journal of Bioinformatics and Computational Biology
- DFBAlab: a fast and reliable MATLAB code for dynamic flux balance analysis
- (2014) Jose A Gomez et al. BMC BIOINFORMATICS
- Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale
- (2014) Joanne K Liu et al. BMC Systems Biology
- Construction of a genome-scale metabolic network of the plant pathogenPectobacterium carotovorumprovides new strategies for bactericide discovery
- (2014) Cheng Wang et al. FEBS LETTERS
- A genome-scale metabolic model of Methanococcus maripaludis S2 for CO2capture and conversion to methane
- (2014) Nishu Goyal et al. Molecular BioSystems
- Predicting Growth Conditions from Internal Metabolic Fluxes in an In-Silico Model of E. coli
- (2014) Viswanadham Sridhara et al. PLoS One
- Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species
- (2014) Esa Pitkänen et al. PLoS Computational Biology
- Genomically and biochemically accurate metabolic reconstruction ofMethanosarcina barkeriFusaro, iMG746
- (2013) Matthew C. Gonnerman et al. Biotechnology Journal
- Antibacterial mechanisms identified through structural systems pharmacology
- (2013) Roger L Chang et al. BMC Systems Biology
- COBRApy: COnstraints-Based Reconstruction and Analysis for Python
- (2013) Ali Ebrahim et al. BMC Systems Biology
- ‘Big data’, Hadoop and cloud computing in genomics
- (2013) Aisling O’Driscoll et al. JOURNAL OF BIOMEDICAL INFORMATICS
- Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii
- (2013) Harish Nagarajan et al. Microbial Cell Factories
- Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction
- (2013) E. J. O{middle dot}Brien et al. Molecular Systems Biology
- The Database of Genomic Variants: a curated collection of structural variation in the human genome
- (2013) Jeffrey R. MacDonald et al. NUCLEIC ACIDS RESEARCH
- Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
- (2013) J. M. Monk et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structural Systems Biology Evaluation of Metabolic Thermotolerance in Escherichia coli
- (2013) R. L. Chang et al. SCIENCE
- GEMSiRV: a software platform for GEnome-scale metabolic model simulation, reconstruction and visualization
- (2012) Y.-C. Liao et al. BIOINFORMATICS
- A reliable simulator for dynamic flux balance analysis
- (2012) K. Höffner et al. BIOTECHNOLOGY AND BIOENGINEERING
- FAME, the Flux Analysis and Modeling Environment
- (2012) Joost Boele et al. BMC Systems Biology
- Predicting Drug Targets and Biomarkers of Cancer via Genome-Scale Metabolic Modeling
- (2012) L. Jerby et al. CLINICAL CANCER RESEARCH
- Multiscale Modeling of Metabolism and Macromolecular Synthesis in E. coli and Its Application to the Evolution of Codon Usage
- (2012) Ines Thiele et al. PLoS One
- In silico method for modelling metabolism and gene product expression at genome scale
- (2012) Joshua A. Lerman et al. Nature Communications
- Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks
- (2012) Steven M. Kelk et al. Scientific Reports
- rBioNet: A COBRA toolbox extension for reconstructing high-quality biochemical networks
- (2011) S. G. Thorleifsson et al. BIOINFORMATICS
- SCLpred: protein subcellular localization prediction by N-to-1 neural networks
- (2011) C. Mooney et al. BIOINFORMATICS
- Metabolic reconstruction of the archaeon methanogen Methanosarcina Acetivorans
- (2011) Vinay Satish Kumar et al. BMC Systems Biology
- Interactome Networks and Human Disease
- (2011) Marc Vidal et al. CELL
- Genome-Scale Metabolic Reconstruction and Hypothesis Testing in the Methanogenic Archaeon Methanosarcina acetivorans C2A
- (2011) M. N. Benedict et al. JOURNAL OF BACTERIOLOGY
- Major players on the microbial stage: why archaea are important
- (2011) K. F. Jarrell et al. MICROBIOLOGY-SGM
- Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism
- (2011) R. L. Chang et al. Molecular Systems Biology
- Metabolic flux analysis in eukaryotes
- (2010) Jens Niklas et al. CURRENT OPINION IN BIOTECHNOLOGY
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- Network medicine: a network-based approach to human disease
- (2010) Albert-László Barabási et al. NATURE REVIEWS GENETICS
- Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information
- (2009) Marcio L Acencio et al. BMC BIOINFORMATICS
- Decomposing complex reaction networks using random sampling, principal component analysis, and basis rotation
- (2009) Christian L Barrett et al. BMC Systems Biology
- Connecting extracellular metabolomic measurements to intracellular flux states in yeast
- (2009) Monica L Mo et al. BMC Systems Biology
- SherLoc2: A High-Accuracy Hybrid Method for Predicting Subcellular Localization of Proteins
- (2009) Sebastian Briesemeister et al. JOURNAL OF PROTEOME RESEARCH
- Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima
- (2009) Y. Zhang et al. SCIENCE
- HECTAR: A method to predict subcellular targeting in heterokonts
- (2008) Bernhard Gschloessl et al. BMC BIOINFORMATICS
- Machine learning based analyses on metabolic networks supports high-throughput knockout screens
- (2008) Kitiporn Plaimas et al. BMC Systems Biology
- Enteric fermentation and ruminant eructation: the role (and control?) of methane in the climate change debate
- (2008) Andy Thorpe CLIMATIC CHANGE
- The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates
- (2008) D. A. Rasko et al. JOURNAL OF BACTERIOLOGY
- Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms
- (2008) Kuo-Chen Chou et al. Nature Protocols
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