标题
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
作者
关键词
Genome-scale, Network reconstruction, Metabolism, Gene expression, Constraint-based modeling
出版物
BMC Systems Biology
Volume 7, Issue 1, Pages 74
出版商
Springer Nature
发表日期
2013-08-09
DOI
10.1186/1752-0509-7-74
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum
- (2013) Rasmus Agren et al. PLoS Computational Biology
- Analysis of omics data with genome-scale models of metabolism
- (2012) Daniel R. Hyduke et al. Molecular BioSystems
- Computational tools for the synthetic design of biochemical pathways
- (2012) Marnix H. Medema et al. NATURE REVIEWS MICROBIOLOGY
- JSBML: a flexible Java library for working with SBML
- (2011) Andreas Dräger et al. BIOINFORMATICS
- Elimination of Thermodynamically Infeasible Loops in Steady-State Metabolic Models
- (2011) Jan Schellenberger et al. BIOPHYSICAL JOURNAL
- An application programming interface for CellNetAnalyzer
- (2011) Steffen Klamt et al. BIOSYSTEMS
- A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2
- (2011) Ines Thiele et al. BMC Systems Biology
- A systems-level approach for metabolic engineering of yeast cell factories
- (2011) Il-Kwon Kim et al. FEMS YEAST RESEARCH
- Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase
- (2011) Christian Frezza et al. NATURE
- Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
- (2011) Jan Schellenberger et al. Nature Protocols
- BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
- (2010) Chen Li et al. BMC Systems Biology
- High-throughput generation, optimization and analysis of genome-scale metabolic models
- (2010) Christopher S Henry et al. NATURE BIOTECHNOLOGY
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- Functional States of the Genome-Scale Escherichia Coli Transcriptional Regulatory System
- (2009) Erwin P. Gianchandani et al. PLoS Computational Biology
- Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization
- (2009) Ines Thiele et al. PLoS Computational Biology
- Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production
- (2009) Caroline Colijn et al. PLoS Computational Biology
- LibSBML: an API Library for SBML
- (2008) B. J. Bornstein et al. BIOINFORMATICS
- The Systems Biology Research Tool: evolvable open-source software
- (2008) Jeremiah Wright et al. BMC Systems Biology
- Impact of the solvent capacity constraint on E. coli metabolism
- (2008) Alexei Vazquez et al. BMC Systems Biology
- The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
- (2008) Adam M Feist et al. NATURE BIOTECHNOLOGY
- Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
- (2008) Z. Liu et al. NUCLEIC ACIDS RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started