Genomically and biochemically accurate metabolic reconstruction ofMethanosarcina barkeriFusaro, iMG746

Genetic manipulation of Methanosarcina spp.

(2012) Petra R. A. Kohler et al.   Frontiers in Microbiology

Genome-Scale Metabolic Reconstruction and Hypothesis Testing in the Methanogenic Archaeon Methanosarcina acetivorans C2A

(2011) M. N. Benedict et al.   JOURNAL OF BACTERIOLOGY

Efficient treatment of garbage slurry in methanogenic bioreactor packed by fibrous sponge with high porosity

(2010) Kengo Sasaki et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

High-throughput generation, optimization and analysis of genome-scale metabolic models

(2010) Christopher S Henry et al.   NATURE BIOTECHNOLOGY

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

A Novel Pathway for the Biosynthesis of Heme inArchaea: Genome-Based Bioinformatic Predictions and Experimental Evidence

(2010) Sonja Storbeck et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Convergent evolution of coenzyme M biosynthesis in the Methanosarcinales: cysteate synthase evolved from an ancestral threonine synthase

(2009) David E. Graham et al.   BIOCHEMICAL JOURNAL

An Iron(II) Dependent Formamide Hydrolase Catalyzes the Second Step in the Archaeal Biosynthetic Pathway to Riboflavin and 7,8-Didemethyl-8-hydroxy-5-deazariboflavin

(2009) Laura L. Grochowski et al.   BIOCHEMISTRY

Thermodynamic analysis of biodegradation pathways

(2009) Stacey D. Finley et al.   BIOTECHNOLOGY AND BIOENGINEERING

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Pantoate Kinase and Phosphopantothenate Synthetase, Two Novel Enzymes Necessary for CoA Biosynthesis in the Archaea

(2009) Yuusuke Yokooji et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Methanogenesis byMethanosarcina acetivoransinvolves two structurally and functionally distinct classes of heterodisulfide reductase

(2009) Nicole R. Buan et al.   MOLECULAR MICROBIOLOGY

Applications of genome-scale metabolic reconstructions

(2009) Matthew A Oberhardt et al.   Molecular Systems Biology

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2009) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Hydrogen is a preferred intermediate in the energy-conserving electron transport chain of Methanosarcina barkeri

(2009) G. Kulkarni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Group Contribution Method for Thermodynamic Analysis of Complex Metabolic Networks

(2008) Matthew D. Jankowski et al.   BIOPHYSICAL JOURNAL

Mutagenesis of the C1 Oxidation Pathway in Methanosarcina barkeri: New Insights into the Mtr/Mer Bypass Pathway

(2008) P. V. Welander et al.   JOURNAL OF BACTERIOLOGY

RamA, a Protein Required for Reductive Activation of Corrinoid-dependent Methylamine Methyltransferase Reactions in Methanogenic Archaea

(2008) Tsuneo Ferguson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

(2008) Adam M Feist et al.   NATURE BIOTECHNOLOGY

Reconstruction of biochemical networks in microorganisms

(2008) Adam M. Feist et al.   NATURE REVIEWS MICROBIOLOGY

Methanogenic archaea: ecologically relevant differences in energy conservation

(2008) Rudolf K. Thauer et al.   NATURE REVIEWS MICROBIOLOGY