标题
A navigation guide of synthetic biology tools for Pseudomonas putida
作者
关键词
-
出版物
BIOTECHNOLOGY ADVANCES
Volume 49, Issue -, Pages 107732
出版商
Elsevier BV
发表日期
2021-03-28
DOI
10.1016/j.biotechadv.2021.107732
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Vanillin Production in Pseudomonas: Whole-Genome Sequencing of Pseudomonas sp. Strain 9.1 and Reannotation of Pseudomonas putida CalA as a Vanillin Reductase
- (2020) Javier García-Hidalgo et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Regulatory systems for gene expression control in cyanobacteria
- (2020) Petra Till et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Limited life cycle and cost assessment for the bioconversion of lignin‐derived aromatics into adipic acid
- (2020) Jozef B. J. H. Duuren et al. BIOTECHNOLOGY AND BIOENGINEERING
- Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies
- (2020) Milenko Tokic et al. Biotechnology for Biofuels
- Engineering Pseudomonas putida KT2440 for the production of isobutanol
- (2020) Robert Nitschel et al. ENGINEERING IN LIFE SCIENCES
- Direct biosynthesis of adipic acid from lignin-derived aromatics using engineered Pseudomonas putida KT2440
- (2020) Wei Niu et al. METABOLIC ENGINEERING
- An expanded CRISPRi toolbox for tunable control of gene expression in Pseudomonas putida
- (2020) Christos Batianis et al. Microbial Biotechnology
- Biotransformation of 2,4‐dinitrotoluene in a phototrophic co‐culture of engineered Synechococcus elongatus and Pseudomonas putida
- (2020) Derek T. Fedeson et al. Microbial Biotechnology
- Comparison of Three Xylose Pathways in Pseudomonas putida KT2440 for the Synthesis of Valuable Products
- (2020) Isabel Bator et al. Frontiers in Bioengineering and Biotechnology
- Engineering the Osmotic State of Pseudomonas putida KT2440 for Efficient Cell Disruption and Downstream Processing of Poly(3-Hydroxyalkanoates)
- (2020) Ignacio Poblete-Castro et al. Frontiers in Bioengineering and Biotechnology
- Bio-production of high-purity propionate by engineering l-threonine degradation pathway in Pseudomonas putida
- (2020) Chao Ma et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Response of Pseudomonas putida to Complex, Aromatic‐Rich Fractions from Biomass
- (2020) Mee‐Rye Park et al. ChemSusChem
- Engineering glucose metabolism for enhanced muconic acid production in Pseudomonas putida KT2440
- (2020) Gayle J. Bentley et al. METABOLIC ENGINEERING
- Deletion of genomic islands in the Pseudomonas putida KT2440 genome can create an optimal chassis for synthetic biology applications
- (2020) Peixin Liang et al. Microbial Cell Factories
- Tailor-made sRNAs: a plasmid tool to control the expression of target mRNAs in Pseudomonas putida
- (2020) Patrícia Apura et al. PLASMID
- Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis
- (2020) Ove Øyås et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Unconstrained genome targeting with near-PAMless engineered CRISPR-Cas9 variants
- (2020) Russell T. Walton et al. SCIENCE
- The Cellular Response to Lanthanum Is Substrate Specific and Reveals a Novel Route for Glycerol Metabolism in Pseudomonas putida KT2440
- (2020) Matthias Wehrmann et al. mBio
- Pooled CRISPRi screening of the cyanobacterium Synechocystis sp PCC 6803 for enhanced industrial phenotypes
- (2020) Lun Yao et al. Nature Communications
- Industrial biotechnology of Pseudomonas putida: advances and prospects
- (2020) Anna Weimer et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Metabolic engineering of Pseudomonas putida for the production of various types of short-chain-length polyhydroxyalkanoates from levulinic acid
- (2020) Daegeun Cha et al. BIORESOURCE TECHNOLOGY
- Improving lysine production through construction of an Escherichia coli enzyme‐constrained model
- (2020) Chao Ye et al. BIOTECHNOLOGY AND BIOENGINEERING
- Production of Substituted Styrene Bioproducts from Lignin and Lignocellulose Using Engineered Pseudomonas putida KT2440
- (2020) James J. Williamson et al. Biotechnology Journal
- Environmental Performance of Pseudomonas putida with a Uracylated Genome
- (2020) Elena Algar et al. CHEMBIOCHEM
- The Wsp intermembrane complex mediates metabolic control of the swim‐attach decision of Pseudomonas putida
- (2020) Ángeles Hueso‐Gil et al. ENVIRONMENTAL MICROBIOLOGY
- Light-response of Pseudomonas putida KT2440 mediated by class II LitR, a photosensor homolog.
- (2020) Satoru Sumi et al. JOURNAL OF BACTERIOLOGY
- Synthesizing Systems Biology Knowledge from Omics Using Genome‐Scale Models
- (2020) Sanjeev Dahal et al. PROTEOMICS
- Chromosomal toxin-antitoxin systems in Pseudomonas putida are rather selfish than beneficial
- (2020) Sirli Rosendahl et al. Scientific Reports
- The naked bacterium: emerging properties of a surfome-streamlined Pseudomonas putida strain
- (2020) Esteban Martinez-García et al. ACS Synthetic Biology
- Characterization of Context-Dependent Effects on Synthetic Promoters
- (2020) Sebastian Köbbing et al. Frontiers in Bioengineering and Biotechnology
- CRISPR-Assisted Multiplex Base Editing System in Pseudomonas putida KT2440
- (2020) Jun Sun et al. Frontiers in Bioengineering and Biotechnology
- Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing
- (2020) Mitchell G. Thompson et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Effect of Photocaged Isopropyl β‐ d ‐1‐thiogalactopyranoside Solubility on the Light Responsiveness of LacI‐controlled Expression Systems in Different Bacteria
- (2020) Fabian Hogenkamp et al. CHEMBIOCHEM
- Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale
- (2020) Deepanwita Banerjee et al. Nature Communications
- Resistance to Bipyridyls Mediated by the TtgABC Efflux System in Pseudomonas putida KT2440
- (2020) Tania Henríquez et al. Frontiers in Microbiology
- Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production
- (2020) Snorre Sulheim et al. iScience
- For the sake of the Bioeconomy: define what a Synthetic Biology Chassis is!
- (2020) Víctor de Lorenzo et al. New Biotechnology
- Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains
- (2019) Ilaria Massaiu et al. Microbial Cell Factories
- Physical decoupling of XylS/Pm regulatory elements and conditional proteolysis enable precise control of gene expression in Pseudomonas putida
- (2019) Daniel C. Volke et al. Microbial Biotechnology
- Accelerated genome engineering of Pseudomonas putida by I-Sce I―mediated recombination and CRISPR-Cas9 counterselection
- (2019) Nicolas T. Wirth et al. Microbial Biotechnology
- Protocols for RecET-based markerless gene knockout and integration to express heterologous biosynthetic gene clusters in Pseudomonas putida
- (2019) Kyeong Rok Choi et al. Microbial Biotechnology
- A gRNA-tRNA array for CRISPR-Cas9 based rapid multiplexed genome editing in Saccharomyces cerevisiae
- (2019) Yueping Zhang et al. Nature Communications
- Synthetic biology approaches for chromosomal integration of genes and pathways in industrial microbial systems
- (2019) Lei Li et al. BIOTECHNOLOGY ADVANCES
- Pseudomonas putida KT2440 metabolism undergoes sequential modifications during exponential growth in a complete medium as compounds are gradually consumed
- (2019) Lázaro Molina et al. ENVIRONMENTAL MICROBIOLOGY
- The next generation of CRISPR–Cas technologies and applications
- (2019) Adrian Pickar-Oliver et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Expanding the Toolbox of Broad Host-Range Transcriptional Terminators for Proteobacteria through Metagenomics
- (2019) Vanesa Amarelle et al. ACS Synthetic Biology
- Lessons from Two Design–Build–Test–Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning
- (2019) Paul Opgenorth et al. ACS Synthetic Biology
- Transposon-encoded CRISPR–Cas systems direct RNA-guided DNA integration
- (2019) Sanne E. Klompe et al. NATURE
- RNA-guided DNA insertion with CRISPR-associated transposases
- (2019) Jonathan Strecker et al. SCIENCE
- Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency
- (2019) Santiago Gisler et al. Nature Communications
- Pseudomonas putida KT 2440 is HV 1 certified, not GRAS
- (2019) Linde F. C. Kampers et al. Microbial Biotechnology
- Cell density-dependent auto-inducible promoters for expression of recombinant proteins in Pseudomonas putida
- (2019) Annika Meyers et al. Microbial Biotechnology
- CRISPR-Cas9 genome editing approaches in filamentous fungi and oomycetes
- (2019) Mariana Schuster et al. FUNGAL GENETICS AND BIOLOGY
- Predicting CRISPR/Cas9-Induced Mutations for Precise Genome Editing
- (2019) Kutubuddin A. Molla et al. TRENDS IN BIOTECHNOLOGY
- Influence of the Crc global regulator on substrate uptake rates and the distribution of metabolic fluxes in Pseudomonas putida KT2440 growing in a complete medium
- (2019) Lázaro Molina et al. ENVIRONMENTAL MICROBIOLOGY
- High‐quality genome‐scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities
- (2019) Juan Nogales et al. ENVIRONMENTAL MICROBIOLOGY
- Recent advances in the CRISPR genome editing tool set
- (2019) Su Bin Moon et al. EXPERIMENTAL AND MOLECULAR MEDICINE
- In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions
- (2019) Linde F. C. Kampers et al. Microbial Cell Factories
- Pass-back chain extension expands multimodular assembly line biosynthesis
- (2019) Jia Jia Zhang et al. Nature Chemical Biology
- SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts
- (2019) Esteban Martínez-García et al. NUCLEIC ACIDS RESEARCH
- Towards a fully automated algorithm driven platform for biosystems design
- (2019) Mohammad HamediRad et al. Nature Communications
- CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria
- (2019) Gaoyan Wang et al. Nature Microbiology
- Integration Host Factor IHF facilitates homologous recombination and mutagenic processes in Pseudomonas putida
- (2019) Katren Mikkel et al. DNA REPAIR
- Digitalizing heterologous gene expression in Gram‐negative bacteria with a portable ON/OFF module
- (2019) Belén Calles et al. Molecular Systems Biology
- Biotransformation of corn bran derived ferulic acid to vanillic acid using engineered Pseudomonas putida KT2440
- (2019) Priya Upadhyay et al. PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY
- Development of an autonomous and bifunctional quorum-sensing circuit for metabolic flux control in engineeredEscherichia coli
- (2019) Christina V. Dinh et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Systematic Dissection of Sequence Elements Controlling σ70 Promoters Using a Genomically-Encoded Multiplexed Reporter Assay in E. coli
- (2018) Guillaume Urtecho et al. BIOCHEMISTRY
- Building a genome engineering toolbox in nonmodel prokaryotic microbes
- (2018) Emily Freed et al. BIOTECHNOLOGY AND BIOENGINEERING
- CRISPR/Cas9 Assisted Multiplex Genome Editing Technique in Escherichia coli
- (2018) Xu Feng et al. Biotechnology Journal
- Genetic tools for reliable gene expression and recombineering in Pseudomonas putida
- (2018) Taylor B. Cook et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Markerless gene knockout and integration to express heterologous biosynthetic gene clusters in Pseudomonas putida
- (2018) Kyeong Rok Choi et al. METABOLIC ENGINEERING
- Optimal bioprocess design through a gene regulatory network – Growth kinetic hybrid model: Towards replacing Monod kinetics
- (2018) Argyro Tsipa et al. METABOLIC ENGINEERING
- Refactoring the upper sugar metabolism of Pseudomonas putida for co-utilization of cellobiose, xylose, and glucose
- (2018) Pavel Dvořák et al. METABOLIC ENGINEERING
- Rediverting carbon flux in Clostridium ljungdahlii using CRISPR interference (CRISPRi)
- (2018) Benjamin M. Woolston et al. METABOLIC ENGINEERING
- Genome editing and transcriptional repression in Pseudomonas putida KT2440 via the type II CRISPR system
- (2018) Jun Sun et al. Microbial Cell Factories
- The CRISPR tool kit for genome editing and beyond
- (2018) Mazhar Adli Nature Communications
- Tuning the dynamic range of bacterial promoters regulated by ligand-inducible transcription factors
- (2018) Ye Chen et al. Nature Communications
- CRISPR/Cas9 Assisted Multiplex Genome Editing Technique in Escherichia coli
- (2018) Xu Feng et al. Biotechnology Journal
- CRISPR for Crop Improvement: An Update Review
- (2018) Deepa Jaganathan et al. Frontiers in Plant Science
- Simultaneous Improvements of Pseudomonas Cell Growth and Polyhydroxyalkanoate Production from a Lignin Derivative for Lignin-Consolidated Bioprocessing
- (2018) Xiaopeng Wang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A new sRNA mediated post-transcriptional regulation system for Bacillus subtilis
- (2018) Sen Yang et al. BIOTECHNOLOGY AND BIOENGINEERING
- Evolved Cas9 variants with broad PAM compatibility and high DNA specificity
- (2018) Johnny H. Hu et al. NATURE
- Engineered CRISPR-Cas9 nuclease with expanded targeting space
- (2018) Hiroshi Nishimasu et al. SCIENCE
- Improved Thermotolerance of Genome-Reduced Pseudomonas putida EM42 Enables Effective Functioning of the PL /c I857 System
- (2018) Tomás Aparicio et al. Biotechnology Journal
- Dynamic control of endogenous metabolism with combinatorial logic circuits
- (2018) Felix Moser et al. Molecular Systems Biology
- Base editing: precision chemistry on the genome and transcriptome of living cells
- (2018) Holly A. Rees et al. NATURE REVIEWS GENETICS
- Analysis of Pseudomonas putida growth on non-trivial carbon sources using transcriptomics and genome-scale modelling
- (2018) Isotta D'Arrigo et al. Environmental Microbiology Reports
- A Post-translational Metabolic Switch Enables Complete Decoupling of Bacterial Growth from Biopolymer Production in Engineered Escherichia coli
- (2018) Gonzalo Durante-Rodríguez et al. ACS Synthetic Biology
- A Multiplex Genome Editing Method for Escherichia coli Based on CRISPR-Cas12a
- (2018) Xiang Ao et al. Frontiers in Microbiology
- In silico engineering of Pseudomonas metabolism reveals new biomarkers for increased biosurfactant production
- (2018) Annalisa Occhipinti et al. PeerJ
- A versatile one-step CRISPR-Cas9 based approach to plasmid-curing
- (2017) Ida Lauritsen et al. Microbial Cell Factories
- Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints
- (2017) Benjamín J Sánchez et al. Molecular Systems Biology
- Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms
- (2017) Axel von Kamp et al. Nature Communications
- Characterizing a thermostable Cas9 for bacterial genome editing and silencing
- (2017) Ioannis Mougiakos et al. Nature Communications
- Experimental validation of in silico estimated biomass yields of Pseudomonas putida KT2440
- (2017) Sarah Beate Hintermayer et al. Biotechnology Journal
- CRISPR/Cas9-Based Counterselection Boosts Recombineering Efficiency in Pseudomonas putida
- (2017) Tomás Aparicio et al. Biotechnology Journal
- Design, Optimization and Application of Small Molecule Biosensor in Metabolic Engineering
- (2017) Yang Liu et al. Frontiers in Microbiology
- The XylS/Pm regulator/promoter system and its use in fundamental studies of bacterial gene expression, recombinant protein production and metabolic engineering
- (2017) Agnieszka Gawin et al. Microbial Biotechnology
- A standardized workflow for surveying recombinases expands bacterial genome-editing capabilities
- (2017) Deirdre E. Ricaurte et al. Microbial Biotechnology
- CRISPR/Cas9 in Genome Editing and Beyond
- (2016) Haifeng Wang et al. Annual Review of Biochemistry
- Mechanisms of Bacterial Transcription Termination: All Good Things Must End
- (2016) Ananya Ray-Soni et al. Annual Review of Biochemistry
- CRISPR technologies for bacterial systems: Current achievements and future directions
- (2016) Kyeong Rok Choi et al. BIOTECHNOLOGY ADVANCES
- Efficient gene knockdown in Clostridium acetobutylicum by synthetic small regulatory RNAs
- (2016) Changhee Cho et al. BIOTECHNOLOGY AND BIOENGINEERING
- The Ssr protein (T1E_1405) fromPseudomonas putidaDOT-T1E enables oligonucleotide-based recombineering in platform strainP. putidaEM42
- (2016) Tomás Aparicio et al. Biotechnology Journal
- A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria
- (2016) Jason M. Peters et al. CELL
- The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis
- (2016) Eugeni Belda et al. ENVIRONMENTAL MICROBIOLOGY
- Systems biology-guided biodesign of consolidated lignin conversion
- (2016) Lu Lin et al. GREEN CHEMISTRY
- Metabolic engineering of Pseudomonas putida for production of docosahexaenoic acid based on a myxobacterial PUFA synthase
- (2016) Katja Gemperlein et al. METABOLIC ENGINEERING
- Integrated analysis of gene expression and metabolic fluxes in PHA-producing Pseudomonas putida grown on glycerol
- (2016) Veronique Beckers et al. Microbial Cell Factories
- Copy number variability of expression plasmids determined by cell sorting and Droplet Digital PCR
- (2016) Michael Jahn et al. Microbial Cell Factories
- A highly precise and portable genome engineering method allows comparison of mutational effects across bacterial species
- (2016) Ákos Nyerges et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genetic circuit design automation
- (2016) A. A. K. Nielsen et al. SCIENCE
- Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
- (2016) Jasper J. Koehorst et al. Scientific Reports
- Broad-Host-Range ProUSER Vectors Enable Fast Characterization of Inducible Promoters and Optimization of p-Coumaric Acid Production in Pseudomonas putida KT2440
- (2016) Patricia Calero et al. ACS Synthetic Biology
- The Ssr protein (T1E_1405) fromPseudomonas putidaDOT-T1E enables oligonucleotide-based recombineering in platform strainP. putidaEM42
- (2016) Tomás Aparicio et al. Biotechnology Journal
- Rapid and high-throughput construction of microbial cell-factories with regulatory noncoding RNAs
- (2015) Amit Kumar Chaudhary et al. BIOTECHNOLOGY ADVANCES
- Tn5/7-lux: a versatile tool for the identification and capture of promoters in Gram-negative bacteria
- (2015) Steven T Bruckbauer et al. BMC MICROBIOLOGY
- The Crc/CrcZ-CrcY global regulatory system helps the integration of gluconeogenic and glycolytic metabolism inPseudomonas putida
- (2015) Ruggero La Rosa et al. ENVIRONMENTAL MICROBIOLOGY
- Modeling the Interplay of Pseudomonas putida EIIANtr with the Potassium Transporter KdpFABC
- (2015) S. Wolf et al. JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY
- Dynamic knockdown of E. coli central metabolism for redirecting fluxes of primary metabolites
- (2015) Irene M. Brockman et al. METABOLIC ENGINEERING
- In SilicoConstraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories
- (2015) Paulo Maia et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Enrichments of gene replacement events by Agrobacterium-mediated recombinase-mediated cassette exchange
- (2015) Hiroyasu Ebinuma et al. MOLECULAR BREEDING
- A set of powerful negative selection systems for unmodified Enterobacteriaceae
- (2015) Varnica Khetrapal et al. NUCLEIC ACIDS RESEARCH
- Harnessing CRISPR–Cas systems for bacterial genome editing
- (2015) Kurt Selle et al. TRENDS IN MICROBIOLOGY
- The Glycerol-Dependent Metabolic Persistence of Pseudomonas putida KT2440 Reflects the Regulatory Logic of the GlpR Repressor
- (2015) Pablo I. Nikel et al. mBio
- Targeted Large-Scale Deletion of Bacterial Genomes Using CRISPR-Nickases
- (2015) Kylie Standage-Beier et al. ACS Synthetic Biology
- Tn7-Based Device for Calibrated Heterologous Gene Expression in Pseudomonas putida
- (2015) Sebastian Zobel et al. ACS Synthetic Biology
- Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy
- (2015) Masaki Shintani et al. Frontiers in Microbiology
- Functional Characterization of the Mannitol Promoter of Pseudomonas fluorescens DSM 50106 and Its Application for a Mannitol-Inducible Expression System for Pseudomonas putida KT2440
- (2015) Jana Hoffmann et al. PLoS One
- The Functional Structure of Central Carbon Metabolism in Pseudomonas putida KT2440
- (2014) Suresh Sudarsan et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Small RNA regulators in bacteria: powerful tools for metabolic engineering and synthetic biology
- (2014) Zhen Kang et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Pseudomonas 2.0: genetic upgrading of P. putida KT2440 as an enhanced host for heterologous gene expression
- (2014) Esteban Martínez-García et al. Microbial Cell Factories
- Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks
- (2014) A. A. Nielsen et al. Molecular Systems Biology
- Tunable protein degradation in bacteria
- (2014) D Ewen Cameron et al. NATURE BIOTECHNOLOGY
- Rapid editing and evolution of bacterial genomes using libraries of synthetic DNA
- (2014) Ryan R Gallagher et al. Nature Protocols
- SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities
- (2014) Esteban Martínez-García et al. NUCLEIC ACIDS RESEARCH
- Systems-level modeling of mycobacterial metabolism for the identification of new (multi-)drug targets
- (2014) Rienk A. Rienksma et al. SEMINARS IN IMMUNOLOGY
- Endogenous Small RNA Clusters in Plants
- (2014) Yong-Xin Liu et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Functional characterization and application of a tightly regulated MekR/P mekA expression system in Escherichia coli and Pseudomonas putida
- (2013) Nadja Graf et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Expanding the scope of site-specific recombinases for genetic and metabolic engineering
- (2013) Thomas Gaj et al. BIOTECHNOLOGY AND BIOENGINEERING
- Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition
- (2013) Jozef BJH van Duuren et al. BMC BIOTECHNOLOGY
- Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
- (2013) Lei S. Qi et al. CELL
- Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity
- (2013) F. Ann Ran et al. CELL
- Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs
- (2013) Dokyun Na et al. NATURE BIOTECHNOLOGY
- Precise and reliable gene expression via standard transcription and translation initiation elements
- (2013) Vivek K Mutalik et al. NATURE METHODS
- CRISPR interference (CRISPRi) for sequence-specific control of gene expression
- (2013) Matthew H Larson et al. Nature Protocols
- Synthetic tolerance: three noncoding small RNAs, DsrA, ArcZ and RprA, acting supra-additively against acid stress
- (2013) S. M. Gaida et al. NUCLEIC ACIDS RESEARCH
- Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
- (2013) David Bikard et al. NUCLEIC ACIDS RESEARCH
- The transcriptional regulator CprK detects chlorination by combining direct and indirect readout mechanisms
- (2013) L. R. Kemp et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Tailored fatty acid synthesis via dynamic control of fatty acid elongation
- (2013) J. P. Torella et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regulatory RNAs
- (2013) Jorge Vazquez-Anderson et al. RNA Biology
- A High-Throughput Functional Complementation Assay for Classification of BRCA1 Missense Variants
- (2013) P. Bouwman et al. Cancer Discovery
- Industrial biotechnology of Pseudomonas putida and related species
- (2012) Ignacio Poblete-Castro et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida
- (2012) Andreas Kremling et al. BMC Systems Biology
- Streamlining genomes: toward the generation of simplified and stabilized microbial systems
- (2012) Audrey Leprince et al. CURRENT OPINION IN BIOTECHNOLOGY
- The polyhydroxyalkanoate metabolism controls carbon and energy spillage in Pseudomonas putida
- (2012) I. F. Escapa et al. ENVIRONMENTAL MICROBIOLOGY
- Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida
- (2012) Audrey Leprince et al. ENVIRONMENTAL MICROBIOLOGY
- The TOL network ofPseudomonas putidamt-2 processes multiple environmental inputs into a narrowresponse space
- (2012) Rafael Silva-Rocha et al. ENVIRONMENTAL MICROBIOLOGY
- Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors
- (2012) Pablo I. Nikel et al. JOURNAL OF BIOTECHNOLOGY
- In-silico-driven metabolic engineering of Pseudomonas putida for enhanced production of poly-hydroxyalkanoates
- (2012) Ignacio Poblete-Castro et al. METABOLIC ENGINEERING
- The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes
- (2012) Rafael Silva-Rocha et al. NUCLEIC ACIDS RESEARCH
- TREX: A Universal Tool for the Transfer and Expression of Biosynthetic Pathways in Bacteria
- (2012) Anita Loeschcke et al. ACS Synthetic Biology
- Mechanisms of Resistance to Chloramphenicol in Pseudomonas putida KT2440
- (2011) Matilde Fernández et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes
- (2011) Esteban Martínez-García et al. BMC MICROBIOLOGY
- The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms
- (2011) Rafael Silva-Rocha et al. ENVIRONMENTAL MICROBIOLOGY
- Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440
- (2011) Esteban Martínez-García et al. ENVIRONMENTAL MICROBIOLOGY
- Efficient production of soluble recombinant single chain Fv fragments by a Pseudomonas putida strain KT2440 cell factory
- (2011) Thorben Dammeyer et al. Microbial Cell Factories
- Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement
- (2011) Farren J. Isaacs et al. SCIENCE
- Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis
- (2011) Matthew A. Oberhardt et al. PLoS Computational Biology
- In silicogenome-scale metabolic analysis ofPseudomonas putidaKT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival
- (2010) Seung Bum Sohn et al. Biotechnology Journal
- In silico feasibility of novel biodegradation pathways for 1,2,4-trichlorobenzene
- (2010) Stacey D Finley et al. BMC Systems Biology
- The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid
- (2010) Michalis Koutinas et al. ENVIRONMENTAL MICROBIOLOGY
- A General Mechanism for Network-Dosage Compensation in Gene Circuits
- (2010) M. Acar et al. SCIENCE
- (Re-)construction, characterization and modeling of systems for synthetic biology
- (2009) María Suárez Diez et al. Biotechnology Journal
- Programming cells by multiplex genome engineering and accelerated evolution
- (2009) Harris H. Wang et al. NATURE
- Automated design of synthetic ribosome binding sites to control protein expression
- (2009) Howard M Salis et al. NATURE BIOTECHNOLOGY
- Genetic noise control via protein oligomerization
- (2008) Cheol-Min Ghim et al. BMC Systems Biology
- A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory
- (2008) Juan Nogales et al. BMC Systems Biology
- Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1
- (2008) M. A. Oberhardt et al. JOURNAL OF BACTERIOLOGY
- Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology
- (2008) Jacek Puchałka et al. PLoS Computational Biology
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