Tuning the dynamic range of bacterial promoters regulated by ligand-inducible transcription factors

Orthogonal intercellular signaling for programmed spatial behavior

(2016) P. K. Grant et al.   Molecular Systems Biology

Characterization of Intrinsic Properties of Promoters

(2016) Timothy J. Rudge et al.   ACS Synthetic Biology

'Deadman' and 'Passcode' microbial kill switches for bacterial containment

(2015) Clement T Y Chan et al.   Nature Chemical Biology

Emergent genetic oscillations in a synthetic microbial consortium

(2015) Y. Chen et al.   SCIENCE

The Transcription Factor Titration Effect Dictates Level of Gene Expression

(2014) Robert C. Brewster et al.   CELL

Modular, Multi-Input Transcriptional Logic Gating with Orthogonal LacI/GalR Family Chimeras

(2014) David L. Shis et al.   ACS Synthetic Biology

Genomic mining of prokaryotic repressors for orthogonal logic gates

(2013) Brynne C Stanton et al.   Nature Chemical Biology

Precise and reliable gene expression via standard transcription and translation initiation elements

(2013) Vivek K Mutalik et al.   NATURE METHODS

Multi-Input Regulation and Logic with T7 Promoters in Cells and Cell-Free Systems

(2013) Sukanya Iyer et al.   PLoS One

RNA processing enables predictable programming of gene expression

(2012) Lei Qi et al.   NATURE BIOTECHNOLOGY

Ribozyme-based insulator parts buffer synthetic circuits from genetic context

(2012) Chunbo Lou et al.   NATURE BIOTECHNOLOGY

Tuning Promoter Strength through RNA Polymerase Binding Site Design in Escherichia coli

(2012) Robert C. Brewster et al.   PLoS Computational Biology

Thermodynamic Analysis of Mutant lac Repressors

(2011) Robert Daber et al.   JOURNAL OF MOLECULAR BIOLOGY

Predicting the strength of UP-elements and full-length E. coli σE promoters

(2011) Virgil A. Rhodius et al.   NUCLEIC ACIDS RESEARCH

Quantitative dissection of the simple repression input-output function

(2011) H. G. Garcia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Robust multicellular computing using genetically encoded NOR gates and chemical ‘wires’

(2010) Alvin Tamsir et al.   NATURE

Design, construction and characterization of a set of insulated bacterial promoters

(2010) J. H. Davis et al.   NUCLEIC ACIDS RESEARCH

Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence

(2010) J. B. Kinney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting strength and function for promoters of the Escherichia coli alternative sigma factor,  E

(2010) V. A. Rhodius et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Forward engineering of synthetic bio-logical AND gates

(2009) Kavita Iyer Ramalingam et al.   BIOCHEMICAL ENGINEERING JOURNAL

Diversity-based, model-guided construction of synthetic gene networks with predicted functions

(2009) Tom Ellis et al.   NATURE BIOTECHNOLOGY

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

Recombineering: a homologous recombination-based method of genetic engineering

(2009) Shyam K Sharan et al.   Nature Protocols

Measuring the activity of BioBrick promoters using an in vivo reference standard

(2009) Jason R Kelly et al.   Journal of Biological Engineering

Construction and Enhancement of a Minimal Genetic AND Logic Gate

(2008) D. J. Sayut et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A One Pot, One Step, Precision Cloning Method with High Throughput Capability

(2008) Carola Engler et al.   PLoS One