Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains

Genetic and metabolic engineering for microbial production of poly-γ-glutamic acid

(2018) Mingfeng Cao et al.   BIOTECHNOLOGY ADVANCES

Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints

(2017) Benjamín J Sánchez et al.   Molecular Systems Biology

Extracellular Self-Assembly of Functional and Tunable Protein Conjugates from Bacillus subtilis

(2017) Charlie Gilbert et al.   ACS Synthetic Biology

Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis

(2017) Aida Kalantari et al.   Frontiers in Microbiology

Metabolic Models of Protein Allocation Call for the Kinetome

(2017) Avlant Nilsson et al.   Cell Systems

Microbial synthesis of poly-γ-glutamic acid: current progress, challenges, and future perspectives

(2016) Zhiting Luo et al.   Biotechnology for Biofuels

Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitrokcatmeasurements

(2016) Dan Davidi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Construction and analysis of a genome-scale metabolic network for Bacillus licheniformis WX-02

(2016) Jing Guo et al.   RESEARCH IN MICROBIOLOGY

The Next Generation of Synthetic Biology Chassis: Moving Synthetic Biology from the Laboratory to the Field

(2016) Bryn L. Adams   ACS Synthetic Biology

Optimization of medium for the production of subtilisin from Bacillus subtilis MTCC 441

(2016) S Navaneeth et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Metabolic Trade-offs in Yeast are Caused by F1F0-ATP synthase

(2016) Avlant Nilsson et al.   Scientific Reports

Proteomic profiling of Bacillus licheniformis reveals a stress response mechanism in the synthesis of extracellular polymeric flocculants

(2015) Wencheng Yu et al.   BIOTECHNOLOGY AND BIOENGINEERING

Quantitative prediction of genome-wide resource allocation in bacteria

(2015) Anne Goelzer et al.   METABOLIC ENGINEERING

Improved poly-γ-glutamic acid production in Bacillus amyloliquefaciens by modular pathway engineering

(2015) Jun Feng et al.   METABOLIC ENGINEERING

Multi-Faceted Characterization of a Novel LuxR-Repressible Promoter Library for Escherichia coli

(2015) Susanna Zucca et al.   PLoS One

γ-PGA Hydrolases of Phage Origin in Bacillus subtilis and Other Microbial Genomes

(2015) Stefania Mamberti et al.   PLoS One

Comprehensive Absolute Quantification of the Cytosolic Proteome ofBacillus subtilisby Data Independent, Parallel Fragmentation in Liquid Chromatography/Mass Spectrometry (LC/MSE)

(2014) Jan Muntel et al.   MOLECULAR & CELLULAR PROTEOMICS

Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism

(2014) Daniel Machado et al.   PLoS Computational Biology

What is the total number of protein molecules per cell volume? A call to rethink some published values

(2013) Ron Milo   BIOESSAYS

Knockout ofpgdSandggtgenes improves γ-PGA yield inB. subtilis

(2013) Viola Scoffone et al.   BIOTECHNOLOGY AND BIOENGINEERING

In silico metabolic engineering of Bacillus subtilis for improved production of riboflavin, Egl-237, (R,R)-2,3-butanediol and isobutanol

(2013) Tong Hao et al.   Molecular BioSystems

Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis

(2013) V. Chubukov et al.   Molecular Systems Biology

The cofactor preference of glucose-6-phosphate dehydrogenase from Escherichia coli- modeling the physiological production of reduced cofactors

(2012) Karel Olavarría et al.   FEBS Journal

Studies on the UV spectrum of poly(γ-glutamic acid) based on development of a simple quantitative method

(2012) Wei Zeng et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

PaxDb, a Database of Protein Abundance Averages Across All Three Domains of Life

(2012) M. Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model

(2012) Kosei Tanaka et al.   NUCLEIC ACIDS RESEARCH

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Prediction of Microbial Growth Rate versus Biomass Yield by a Metabolic Network with Kinetic Parameters

(2012) Roi Adadi et al.   PLoS Computational Biology

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

SABIO-RK--database for biochemical reaction kinetics

(2011) U. Wittig et al.   NUCLEIC ACIDS RESEARCH

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model

(2010) K. Yizhak et al.   BIOINFORMATICS

Triosephosphate isomerase: a highly evolved biocatalyst

(2010) R. K. Wierenga et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Structure and Reactivity of Bacillus subtilis MenD Catalyzing the First Committed Step in Menaquinone Biosynthesis

(2010) Alice Dawson et al.   JOURNAL OF MOLECULAR BIOLOGY

A Comprehensive Proteomics and Transcriptomics Analysis of Bacillus subtilis Salt Stress Adaptation

(2009) H. Hahne et al.   JOURNAL OF BACTERIOLOGY

SwrAA activates poly- -glutamate synthesis in addition to swarming in Bacillus subtilis

(2009) C. Osera et al.   MICROBIOLOGY-SGM

iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations

(2009) Christopher S Henry et al.   GENOME BIOLOGY