标题
Innovations to culturing the uncultured microbial majority
作者
关键词
-
出版物
NATURE REVIEWS MICROBIOLOGY
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-10-22
DOI
10.1038/s41579-020-00458-8
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- More support for Earth’s massive microbiome
- (2020) Jay T. Lennon et al. Biology Direct
- Isolation of an archaeon at the prokaryote–eukaryote interface
- (2020) Hiroyuki Imachi et al. NATURE
- Next-generation physiology approaches to study microbiome function at single cell level
- (2020) Roland Hatzenpichler et al. NATURE REVIEWS MICROBIOLOGY
- Influence of Substrate Concentration on the Culturability of Heterotrophic Soil Microbes Isolated by High-Throughput Dilution-to-Extinction Cultivation
- (2020) Ryan P. Bartelme et al. mSphere
- “Candidatus Ethanoperedens,” a Thermophilic Genus of Archaea Mediating the Anaerobic Oxidation of Ethane
- (2020) Cedric Jasper Hahn et al. mBio
- Bacterial chemolithoautotrophy via manganese oxidation
- (2020) Hang Yu et al. NATURE
- Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes
- (2020) William J Watterson et al. eLife
- Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column
- (2019) Linta Reji et al. ISME Journal
- An automated Raman-based platform for the sorting of live cells by functional properties
- (2019) Kang Soo Lee et al. Nature Microbiology
- Development of a Bioelectrochemical System as a Tool to Enrich H2-Producing Syntrophic Bacteria
- (2019) Juan J. L. Guzman et al. Frontiers in Microbiology
- Anaerobic oxidation of ethane by archaea from a marine hydrocarbon seep
- (2019) Song-Can Chen et al. NATURE
- Predicting the optimal growth temperatures of prokaryotes using only genome derived features
- (2019) David B Sauer et al. BIOINFORMATICS
- Global diversity and biogeography of bacterial communities in wastewater treatment plants
- (2019) Linwei Wu et al. Nature Microbiology
- Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism
- (2019) Anja Spang et al. Nature Microbiology
- A “Cultural” Renaissance: Genomics Breathes New Life into an Old Craft
- (2019) Paul Carini mSystems
- Culturing the Uncultured: Risk versus Reward
- (2019) J. Cameron Thrash mSystems
- Anaerobic hydrocarbon degradation in candidate phylum ‘Atribacteria’ (JS1) inferred from genomics
- (2019) Yi-Fan Liu et al. ISME Journal
- Species distinction in the Trichophyton rubrum complex
- (2019) Huilin Su et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Physiology and Distribution of Archaeal Methanotrophs That Couple Anaerobic Oxidation of Methane with Sulfate Reduction
- (2019) S. Bhattarai et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Unexpected host dependency of Antarctic Nanohaloarchaeota
- (2019) Joshua N. Hamm et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Development of a novel cultivation technique for uncultured soil bacteria
- (2019) Dhiraj Kumar Chaudhary et al. Scientific Reports
- Targeted isolation and cultivation of uncultivated bacteria by reverse genomics
- (2019) Karissa L. Cross et al. NATURE BIOTECHNOLOGY
- Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption–Ionization Time of Flight Mass Spectrometry Data
- (2019) Charles Dumolin et al. mSystems
- Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology
- (2019) Sandra Wiegand et al. Nature Microbiology
- Fluorescence in situ hybridization (FISH) and cell sorting of living bacteria
- (2019) Giampiero Batani et al. Scientific Reports
- Phylogenomics provides robust support for a two-domains tree of life
- (2019) Tom A. Williams et al. Nature Ecology & Evolution
- Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life
- (2018) Cindy J. Castelle et al. CELL
- LPSN – List of Prokaryotic names with Standing in Nomenclature (bacterio.net), 20 years on
- (2018) Aidan C. Parte INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Cultivation and genomics of the first freshwater SAR11 (LD12) isolate
- (2018) Michael W. Henson et al. ISME Journal
- The social network of microorganisms — how auxotrophies shape complex communities
- (2018) Karsten Zengler et al. NATURE REVIEWS MICROBIOLOGY
- A global atlas of the dominant bacteria found in soil
- (2018) Manuel Delgado-Baquerizo et al. SCIENCE
- A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile
- (2018) Takuro Nunoura et al. SCIENCE
- Novel energy conservation strategies and behavior of Pelotomaculum schinkii driving syntrophic propionate catabolism
- (2018) Catalina A Hidalgo et al. ENVIRONMENTAL MICROBIOLOGY
- A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
- (2018) Donovan H Parks et al. NATURE BIOTECHNOLOGY
- BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis
- (2018) Lorenz Christian Reimer et al. NUCLEIC ACIDS RESEARCH
- Newly designed 16S rRNA metabarcoding primers amplify diverse and novel archaeal taxa from the environment
- (2018) Mohammad Bahram et al. Environmental Microbiology Reports
- Phylogenetically Novel Uncultured Microbial Cells Dominate Earth Microbiomes
- (2018) Karen G. Lloyd et al. mSystems
- Assessment of Microbial Community Dynamics in River Bank Filtrate Using High-Throughput Sequencing and Flow Cytometry
- (2018) Christina J. Fiedler et al. Frontiers in Microbiology
- The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes
- (2018) Yusuke Okazaki et al. Frontiers in Microbiology
- Cryptic biogeochemical cycles: unravelling hidden redox reactions
- (2017) Andreas Kappler et al. ENVIRONMENTAL MICROBIOLOGY
- Different phenanthrene-degrading bacteria cultured by in situ soil substrate membrane system and traditional cultivation
- (2017) Huihui Zhao et al. INTERNATIONAL BIODETERIORATION & BIODEGRADATION
- Luteolibacter gellanilyticus sp. nov., a gellan-gum-degrading bacterium of the phylum Verrucomicrobia isolated from miniaturized diffusion chambers
- (2017) Javier Pascual et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling
- (2017) Maliheh Mehrshad et al. ISME Journal
- New insights into marine group III Euryarchaeota, from dark to light
- (2017) Jose M Haro-Moreno et al. ISME Journal
- UFBoot2: Improving the Ultrafast Bootstrap Approximation
- (2017) Diep Thi Hoang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Atmospheric trace gases support primary production in Antarctic desert surface soil
- (2017) Mukan Ji et al. NATURE
- Asgard archaea illuminate the origin of eukaryotic cellular complexity
- (2017) Katarzyna Zaremba-Niedzwiedzka et al. NATURE
- Isolation and characterization of aerobic anoxygenic phototrophs from exposed soils from the Sør Rondane Mountains, East Antarctica
- (2017) Guillaume Tahon et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- In situ click chemistry generation of cyclooxygenase-2 inhibitors
- (2017) Atul Bhardwaj et al. Nature Communications
- Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients
- (2017) Alyse K. Hawley et al. Nature Communications
- In Situ Field Sequencing and Life Detection in Remote (79°26′N) Canadian High Arctic Permafrost Ice Wedge Microbial Communities
- (2017) J. Goordial et al. Frontiers in Microbiology
- Microbial Diversity of Browning Peninsula, Eastern Antarctica Revealed Using Molecular and Cultivation Methods
- (2017) Sarita Pudasaini et al. Frontiers in Microbiology
- Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla
- (2017) Eric D. Becraft et al. Frontiers in Microbiology
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- (2017) Donovan H. Parks et al. Nature Microbiology
- Applications of MALDI-TOF MS in environmental microbiology
- (2016) Inês C. Santos et al. ANALYST
- High-Throughput Single-Cell Cultivation on Microfluidic Streak Plates
- (2016) Cheng-Ying Jiang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Absolute quantification of microbial taxon abundances
- (2016) Ruben Props et al. ISME Journal
- Nanoporous microscale microbial incubators
- (2016) Zhifei Ge et al. LAB ON A CHIP
- Droplet microfluidics for microbiology: techniques, applications and challenges
- (2016) Tomasz S. Kaminski et al. LAB ON A CHIP
- Scaling laws predict global microbial diversity
- (2016) Kenneth J. Locey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Underestimation of Global Microbial Diversity
- (2016) Jay T. Lennon et al. mBio
- Metagenomics uncovers gaps in amplicon-based detection of microbial diversity
- (2016) Emiley A. Eloe-Fadrosh et al. Nature Microbiology
- Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota
- (2016) Inka Vanwonterghem et al. Nature Microbiology
- A new view of the tree of life
- (2016) Laura A. Hug et al. Nature Microbiology
- Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
- (2015) A Apprill et al. AQUATIC MICROBIAL ECOLOGY
- Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
- (2015) Cindy J. Castelle et al. CURRENT BIOLOGY
- Growing microbes in millifluidic droplets
- (2015) Laurent Boitard et al. ENGINEERING IN LIFE SCIENCES
- Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
- (2015) Alma E. Parada et al. ENVIRONMENTAL MICROBIOLOGY
- Phylogeny and physiology of candidate phylum ‘Atribacteria’ (OP9/JS1) inferred from cultivation-independent genomics
- (2015) Masaru K Nobu et al. ISME Journal
- Microfluidic cell sorting: a review of the advances in the separation of cells from debulking to rare cell isolation
- (2015) C. Wyatt Shields IV et al. LAB ON A CHIP
- Unusual biology across a group comprising more than 15% of domain Bacteria
- (2015) Christopher T. Brown et al. NATURE
- A new antibiotic kills pathogens without detectable resistance
- (2015) Losee L. Ling et al. NATURE
- Complex archaea that bridge the gap between prokaryotes and eukaryotes
- (2015) Anja Spang et al. NATURE
- Complete nitrification by Nitrospira bacteria
- (2015) Holger Daims et al. NATURE
- Ecology and exploration of the rare biosphere
- (2015) Michael D. J. Lynch et al. NATURE REVIEWS MICROBIOLOGY
- Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria
- (2015) Brett J Baker et al. Microbiome
- A Hidden Pitfall in the Preparation of Agar Media Undermines Microorganism Cultivability
- (2014) Tomohiro Tanaka et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- High-throughput cultivation and screening platform for unicellular phototrophs
- (2014) Ulrich M Tillich et al. BMC MICROBIOLOGY
- Droplet-Based Microfluidics Platform for Ultra-High-Throughput Bioprospecting of Cellulolytic Microorganisms
- (2014) Majdi Najah et al. CHEMISTRY & BIOLOGY
- Individually addressable arrays of replica microbial cultures enabled by splitting SlipChips
- (2014) Liang Ma et al. Integrative Biology
- Approaches to cultivation of “nonculturable” bacteria: Cyclic cultures
- (2014) A. G. Dorofeev et al. MICROBIOLOGY
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
- (2014) Pablo Yarza et al. NATURE REVIEWS MICROBIOLOGY
- Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells
- (2014) David Berry et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa
- (2014) Liang Ma et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria
- (2014) Elizabeth A. Rettedal et al. Nature Communications
- The phenomenon of microbial uncultivability
- (2013) SS Epstein CURRENT OPINION IN MICROBIOLOGY
- An improved cell separation technique for marine subsurface sediments: applications for high-throughput analysis using flow cytometry and cell sorting
- (2013) Yuki Morono et al. ENVIRONMENTAL MICROBIOLOGY
- Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics
- (2013) Cody S. Sheik et al. ENVIRONMENTAL MICROBIOLOGY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- Microbial life under extreme energy limitation
- (2013) Tori M. Hoehler et al. NATURE REVIEWS MICROBIOLOGY
- Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria
- (2013) Rohit Ghai et al. Scientific Reports
- PCR inhibitors - occurrence, properties and removal
- (2012) C. Schrader et al. JOURNAL OF APPLIED MICROBIOLOGY
- Growing Unculturable Bacteria
- (2012) E. J. Stewart JOURNAL OF BACTERIOLOGY
- The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing
- (2012) Anthony A. Fodor et al. PLoS One
- A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
- (2012) K. Leung et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multiple Approaches To Enhance the Cultivability of Bacteria Associated with the Marine SpongeHaliclona(gellius) sp.
- (2011) Detmer Sipkema et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- New trends in fluorescence in situ hybridization for identification and functional analyses of microbes
- (2011) Michael Wagner et al. CURRENT OPINION IN BIOTECHNOLOGY
- Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
- (2011) Chris L Dupont et al. ISME Journal
- Enhanced cell sorting and manipulation with combined optical tweezer and microfluidic chip technologies
- (2011) Xiaolin Wang et al. LAB ON A CHIP
- Microbial seed banks: the ecological and evolutionary implications of dormancy
- (2011) Jay T. Lennon et al. NATURE REVIEWS MICROBIOLOGY
- The sequence read archive: explosive growth of sequencing data
- (2011) Y. Kodama et al. NUCLEIC ACIDS RESEARCH
- Microdroplet-Enabled Highly Parallel Co-Cultivation of Microbial Communities
- (2011) Jihyang Park et al. PLoS One
- Encapsulating Bacteria in Agarose Microparticles Using Microfluidics for High-Throughput Cell Analysis and Isolation
- (2010) Ye-Jin Eun et al. ACS Chemical Biology
- Use of Ichip for High-Throughput In Situ Cultivation of "Uncultivable" Microbial Species
- (2010) D. Nichols et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Exit from dormancy in microbial organisms
- (2010) Jonathan Dworkin et al. NATURE REVIEWS MICROBIOLOGY
- Hollow-Fiber Membrane Chamber as a Device for In Situ Environmental Cultivation
- (2009) Y. Aoi et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- SlipChip
- (2009) Wenbin Du et al. LAB ON A CHIP
- Electron transfer in syntrophic communities of anaerobic bacteria and archaea
- (2009) Alfons J. M. Stams et al. NATURE REVIEWS MICROBIOLOGY
- Short Peptide Induces an "Uncultivable" Microorganism To Grow In Vitro
- (2008) D. Nichols et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Optical tweezers for single cells
- (2008) H. Zhang et al. Journal of the Royal Society Interface
- An integrated optofluidic platform for Raman-activated cell sorting
- (2008) Adrian Y. Lau et al. LAB ON A CHIP
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