Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology
出版年份 2019 全文链接
标题
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology
作者
关键词
-
出版物
Nature Microbiology
Volume 5, Issue 1, Pages 126-140
出版商
Springer Science and Business Media LLC
发表日期
2019-11-19
DOI
10.1038/s41564-019-0588-1
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Diversity patterns and isolation of Planctomycetes associated with metalliferous deposits from hydrothermal vent fields along the Valu Fa Ridge (SW Pacific)
- (2018) Julia Endresen Storesund et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- How to Build a Bacterial Cell: MreB as the Foreman of E. coli Construction
- (2018) Handuo Shi et al. CELL
- Xanthomonas citri T6SS mediates resistance to Dictyostelium predation and is regulated by an ECF σ factor and cognate Ser/Thr kinase
- (2018) Ethel Bayer-Santos et al. ENVIRONMENTAL MICROBIOLOGY
- Roseisolibacter agri gen. nov., sp. nov., a novel slow-growing member of the under-represented phylum Gemmatimonadetes
- (2018) Javier Pascual et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Signal Peptidase Is Necessary and Sufficient for Site 1 Cleavage of RsiV in Bacillus subtilis in Response to Lysozyme
- (2018) Ana N. Castro et al. JOURNAL OF BACTERIOLOGY
- Prokaryotic cytoskeletons: protein filaments organizing small cells
- (2018) James Wagstaff et al. NATURE REVIEWS MICROBIOLOGY
- Structural insights into the signalling mechanisms of two-component systems
- (2018) Françoise Jacob-Dubuisson et al. NATURE REVIEWS MICROBIOLOGY
- MreB filaments align along greatest principal membrane curvature to orient cell wall synthesis
- (2018) Saman Hussain et al. eLife
- Environmental Factors Support the Formation of Specific Bacterial Assemblages on Microplastics
- (2018) Sonja Oberbeckmann et al. Frontiers in Microbiology
- What bacteria want
- (2018) Michael Y. Galperin ENVIRONMENTAL MICROBIOLOGY
- Trending topics and open questions in anaerobic ammonium oxidation
- (2018) Stijn H Peeters et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Assembly and activation of the Escherichia coli divisome
- (2017) Shishen Du et al. MOLECULAR MICROBIOLOGY
- Determining the bacterial cell biology of Planctomycetes
- (2017) Christian Boedeker et al. Nature Communications
- Determinants of Bacterial Morphology: From Fundamentals to Possibilities for Antimicrobial Targeting
- (2017) Muriel C. F. van Teeseling et al. Frontiers in Microbiology
- Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov. in the Family Opitutaceae of the Verrucomicrobial Subdivision 4
- (2017) Patrick Rast et al. Frontiers in Microbiology
- Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens
- (2016) Leighton Pritchard et al. Analytical Methods
- CDD/SPARCLE: functional classification of proteins via subfamily domain architectures
- (2016) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- Developing Techniques for the Utilization of Planctomycetes As Producers of Bioactive Molecules
- (2016) Olga Jeske et al. Frontiers in Microbiology
- Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea
- (2016) Timo Kohn et al. Frontiers in Microbiology
- IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies
- (2016) Ilias Lagkouvardos et al. Scientific Reports
- MeDuSa: a multi-draft based scaffolder
- (2015) Emanuele Bosi et al. BIOINFORMATICS
- NxTrim: optimized trimming of Illumina mate pair reads: Table 1.
- (2015) Jared O’Connell et al. BIOINFORMATICS
- hybridSPAdes: an algorithm for hybrid assembly of short and long reads
- (2015) Dmitry Antipov et al. BIOINFORMATICS
- Sealer: a scalable gap-closing application for finishing draft genomes
- (2015) Daniel Paulino et al. BMC BIOINFORMATICS
- Extra Cytoplasmic Function sigma factors, recent structural insights into promoter recognition and regulation
- (2015) Sébastien Campagne et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Environmental Sensing in Actinobacteria: a Comprehensive Survey on the Signaling Capacity of This Phylum
- (2015) Xiaoluo Huang et al. JOURNAL OF BACTERIOLOGY
- Complete nitrification by a single microorganism
- (2015) Maartje A. H. J. van Kessel et al. NATURE
- Minimum Information about a Biosynthetic Gene cluster
- (2015) Marnix H Medema et al. Nature Chemical Biology
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
- (2015) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
- (2015) Tilmann Weber et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Planctomycetes do possess a peptidoglycan cell wall
- (2015) Olga Jeske et al. Nature Communications
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters
- (2014) Peter Cimermancic et al. CELL
- Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
- (2014) Pablo Yarza et al. NATURE REVIEWS MICROBIOLOGY
- Expanded microbial genome coverage and improved protein family annotation in the COG database
- (2014) Michael Y. Galperin et al. NUCLEIC ACIDS RESEARCH
- Rhodopirellula lusitana sp. nov. and Rhodopirellula rubra sp. nov., isolated from the surface of macroalgae
- (2014) Joana Bondoso et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Re-interpretation of the evidence for the PVC cell plan supports a Gram-negative origin
- (2013) Damien P. Devos ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- From genome mining to phenotypic microarrays: Planctomycetes as source for novel bioactive molecules
- (2013) Olga Jeske et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Diversity of Planctomycetes in iron-hydroxide deposits from the Arctic Mid Ocean Ridge (AMOR) and description of Bythopirellula goksoyri gen. nov., sp. nov., a novel Planctomycete from deep sea iron-hydroxide deposits
- (2013) Julia E. Storesund et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Signaling diversity and evolution of extracytoplasmic function (ECF) σ factors
- (2013) Thorsten Mascher CURRENT OPINION IN MICROBIOLOGY
- The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
- (2013) Pelin Yilmaz et al. NUCLEIC ACIDS RESEARCH
- SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
- (2012) Elmar Pruesse et al. BIOINFORMATICS
- Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
- (2012) Rolf S Kaas et al. BMC GENOMICS
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- Identification of Proteins Likely To Be Involved in Morphogenesis, Cell Division, and Signal Transduction in Planctomycetes by Comparative Genomics
- (2012) Christian Jogler et al. JOURNAL OF BACTERIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Chlamydia co-opts the rod shape-determining proteins MreB and Pbp2 for cell division
- (2012) Scot P. Ouellette et al. MOLECULAR MICROBIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Characterization of Planctomyces limnophilus and Development of Genetic Tools for Its Manipulation Establish It as a Model Species for the Phylum Planctomycetes
- (2011) Christian Jogler et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Multiple Approaches To Enhance the Cultivability of Bacteria Associated with the Marine SpongeHaliclona(gellius) sp.
- (2011) Detmer Sipkema et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- FLASH: fast length adjustment of short reads to improve genome assemblies
- (2011) T. Magoc et al. BIOINFORMATICS
- Proteinortho: Detection of (Co-)orthologs in large-scale analysis
- (2011) Marcus Lechner et al. BMC BIOINFORMATICS
- Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
- (2011) F. Sievers et al. Molecular Systems Biology
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function
- (2011) John A. Fuerst et al. NATURE REVIEWS MICROBIOLOGY
- IMG: the integrated microbial genomes database and comparative analysis system
- (2011) V. M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- CorE from Myxococcus xanthus Is a Copper-Dependent RNA Polymerase Sigma Factor
- (2011) Nuria Gómez-Santos et al. PLoS Genetics
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group
- (2009) Anke Meyerdierks et al. ENVIRONMENTAL MICROBIOLOGY
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Zavarzinella formosa gen. nov., sp. nov., a novel stalked, Gemmata-like planctomycete from a Siberian peat bog
- (2009) I. S. Kulichevskaya et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) σ factor protein family
- (2009) Anna Staroń et al. MOLECULAR MICROBIOLOGY
- A Novel System of Cytoskeletal Elements in the Human Pathogen Helicobacter pylori
- (2009) Barbara Waidner et al. PLoS Pathogens
- PhySIC_IST: cleaning source trees to infer more informative supertrees
- (2008) Celine Scornavacca et al. BMC BIOINFORMATICS
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Characterization and Evolution of Cell Division and Cell Wall Synthesis Genes in the Bacterial Phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and Phylogenetic Comparison with rRNA Genes
- (2008) M. Pilhofer et al. JOURNAL OF BACTERIOLOGY
- Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
- (2008) E. V. Koonin et al. NUCLEIC ACIDS RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More