A global atlas of the dominant bacteria found in soil

Human embryos: Collect reliable data on embryo selection

(2017) Charis Thompson   NATURE

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

(2017) Supratim Mukherjee et al.   NATURE BIOTECHNOLOGY

Using null models to infer microbial co-occurrence networks

(2017) Nora Connor et al.   PLoS One

Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information

(2017) Albert Barberán et al.   mSphere

SoilGrids250m: Global gridded soil information based on machine learning

(2017) Tomislav Hengl et al.   PLoS One

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing

(2016) Ravi Ranjan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Locally rare species influence grassland ecosystem multifunctionality

(2016) Santiago Soliveres et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Status of the Archaeal and Bacterial Census: an Update

(2016) Patrick D. Schloss et al.   mBio

Temperature mediates continental-scale diversity of microbes in forest soils

(2016) Jizhong Zhou et al.   Nature Communications

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Genome reduction in an abundant and ubiquitous soil bacterium ‘Candidatus Udaeobacter copiosus’

(2016) Tess E. Brewer et al.   Nature Microbiology

The Human Gut Microbiome as a Transporter of Antibiotic Resistance Genes between Continents

(2015) Johan Bengtsson-Palme et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Insights from 20 years of bacterial genome sequencing

(2015) Miriam Land et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Differences in thallus chemistry are related to species-specific effects of biocrust-forming lichens on soil nutrients and microbial communities

(2015) Manuel Delgado-Baquerizo et al.   FUNCTIONAL ECOLOGY

Non-symbiotic Bradyrhizobium ecotypes dominate North American forest soils

(2015) David VanInsberghe et al.   ISME Journal

Mining the microbial dark matter

(2015) Corie Lok   NATURE

Increasing aridity reduces soil microbial diversity and abundance in global drylands

(2015) Fernando T. Maestre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

(2015) Francesco Asnicar et al.   PeerJ

Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide

(2014) Suzanne M. Prober et al.   ECOLOGY LETTERS

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters

(2014) Alexandre B. de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally

(2014) K. S. Ramirez et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

(2013) N. Fierer et al.   SCIENCE

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Invasions: the trail behind, the path ahead, and a test of a disturbing idea

(2011) Angela T. Moles et al.   JOURNAL OF ECOLOGY

UV impacts avoided by the Montreal Protocol

(2011) Paul A. Newman et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Toward Understanding, Managing, and Protecting Microbial Ecosystems

(2011) Paul L. E. Bodelier   Frontiers in Microbiology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Climate change mitigation: A spatial analysis of global land suitability for clean development mechanism afforestation and reforestation

(2008) Robert J. Zomer et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT