标题
Perspectives from Ten Years of Protist Studies by High‐Throughput Metabarcoding
作者
关键词
-
出版物
JOURNAL OF EUKARYOTIC MICROBIOLOGY
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2020-06-05
DOI
10.1111/jeu.12813
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Disentangling the mechanisms shaping the surface ocean microbiota
- (2020) Ramiro Logares et al. Microbiome
- Seasonality of Planktonic Freshwater Ciliates: Are Analyses Based on V9 Regions of the 18S rRNA Gene Correlated With Morphospecies Counts?
- (2019) Gianna Pitsch et al. Frontiers in Microbiology
- A widespread coral-infecting apicomplexan with chlorophyll biosynthesis genes
- (2019) Waldan K. Kwong et al. NATURE
- Improving eDNA‐based protist diversity assessments using networks of amplicon sequence variants
- (2019) Dominik Forster et al. ENVIRONMENTAL MICROBIOLOGY
- Towards PacBio‐based pan‐eukaryote metabarcoding using full‐length ITS sequences
- (2019) Leho Tedersoo et al. Environmental Microbiology Reports
- Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens
- (2019) Kaire Loit et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
- (2019) Guillem Salazar et al. CELL
- Current practice in plankton metabarcoding: optimization and error management
- (2019) Luciana F Santoferrara JOURNAL OF PLANKTON RESEARCH
- Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework
- (2019) Javier del Campo et al. Frontiers in Microbiology
- Intracellular Infection of Diverse Diatoms by an Evolutionary Distinct Relative of the Fungi
- (2019) Aurélie Chambouvet et al. CURRENT BIOLOGY
- Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution
- (2018) Russell J. S. Orr et al. BMC EVOLUTIONARY BIOLOGY
- Species co-occurrence networks: Can they reveal trophic and non-trophic interactions in ecological communities?
- (2018) Mara A. Freilich et al. ECOLOGY
- Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing
- (2018) William D. Orsi et al. ENVIRONMENTAL MICROBIOLOGY
- Genome-reconstruction for eukaryotes from complex natural microbial communities
- (2018) Patrick T. West et al. GENOME RESEARCH
- The ecology and diversity of microbial eukaryotes in geothermal springs
- (2018) Angela M. Oliverio et al. ISME Journal
- 16S rRNA gene metabarcoding and TEM reveals different ecological strategies within the genus Neogloboquadrina (planktonic foraminifer)
- (2018) Clare Bird et al. PLoS One
- β-Diversity, Community Assembly, and Ecosystem Functioning
- (2018) Akira S. Mori et al. TRENDS IN ECOLOGY & EVOLUTION
- A global ocean atlas of eukaryotic genes
- (2018) Quentin Carradec et al. Nature Communications
- Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring
- (2018) Valentin Vasselon et al. Methods in Ecology and Evolution
- Identification of osmoadaptive strategies in the halophile, heterotrophic ciliate Schmidingerothrix salinarum
- (2018) Lea Weinisch et al. PLOS BIOLOGY
- Ubiquitous abundance distribution of non-dominant plankton across the global ocean
- (2018) Enrico Ser-Giacomi et al. Nature Ecology & Evolution
- Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments
- (2018) Felix Heeger et al. Molecular Ecology Resources
- EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution
- (2018) Javier del Campo et al. PLOS BIOLOGY
- Quantifying long-term recurrence in planktonic microbial eukaryotes
- (2018) Caterina R. Giner et al. MOLECULAR ECOLOGY
- Are We Overestimating Protistan Diversity in Nature?
- (2018) David A. Caron et al. TRENDS IN MICROBIOLOGY
- Transition boundaries for protistan species turnover in hypersaline waters of different biogeographic regions
- (2017) Sabine Filker et al. ENVIRONMENTAL MICROBIOLOGY
- Biogeography and diversity of Collodaria (Radiolaria) in the global ocean
- (2017) Tristan Biard et al. ISME Journal
- Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities
- (2017) Wenxue Wu et al. ISME Journal
- UniEuk : Time to Speak a Common Language in Protistology!
- (2017) Cédric Berney et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
- Stochastic Community Assembly: Does It Matter in Microbial Ecology?
- (2017) Jizhong Zhou et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives
- (2017) Leho Tedersoo et al. NEW PHYTOLOGIST
- Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
- (2017) Tobias Guldberg Frøslev et al. Nature Communications
- More protist genomes needed
- (2017) Shannon J. Sibbald et al. Nature Ecology & Evolution
- Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests
- (2017) Frédéric Mahé et al. Nature Ecology & Evolution
- Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes
- (2016) Caterina R. Giner et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Extreme Diversity of Diplonemid Eukaryotes in the Ocean
- (2016) Olga Flegontova et al. CURRENT BIOLOGY
- Comparison of Niskin vs. in situ approaches for analysis of gene expression in deep Mediterranean Sea water samples
- (2016) V.P. Edgcomb et al. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY
- Osmoadaptative Strategy and Its Molecular Signature in Obligately Halophilic Heterotrophic Protists
- (2016) Tommy Harding et al. Genome Biology and Evolution
- Protistan community analysis: key findings of a large-scale molecular sampling
- (2016) Lars Grossmann et al. ISME Journal
- Patterns and processes in microbial biogeography: do molecules and morphologies give the same answers?
- (2016) Luciana F Santoferrara et al. ISME Journal
- Temporal variation of Skeletonema community composition from a long-term time series in Narragansett Bay identified using high-throughput DNA sequencing
- (2016) KL Canesi et al. MARINE ECOLOGY PROGRESS SERIES
- Strengths and Biases of High-Throughput Sequencing Data in the Characterization of Freshwater Ciliate Microbiomes
- (2016) Vittorio Boscaro et al. MICROBIAL ECOLOGY
- Microbial eukaryote plankton communities of high-mountain lakes from three continents exhibit strong biogeographic patterns
- (2016) Sabine Filker et al. MOLECULAR ECOLOGY
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Probing the evolution, ecology and physiology of marine protists using transcriptomics
- (2016) David A. Caron et al. NATURE REVIEWS MICROBIOLOGY
- Insights into global diatom distribution and diversity in the world’s ocean
- (2016) Shruti Malviya et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The ecologist's field guide to sequence-based identification of biodiversity
- (2016) Simon Creer et al. Methods in Ecology and Evolution
- Temporal variation of Skeletonema community composition from a long-term time series in Narragansett Bay identified using high-throughput DNA sequencing
- (2016) KL Canesi et al. MARINE ECOLOGY PROGRESS SERIES
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing
- (2015) Ramon Massana et al. ENVIRONMENTAL MICROBIOLOGY
- Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
- (2015) Noan Le Bescot et al. ENVIRONMENTAL MICROBIOLOGY
- The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.)
- (2015) Solenn Mordret et al. ISME Journal
- Metatranscriptomic census of active protists in soils
- (2015) Stefan Geisen et al. ISME Journal
- Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans
- (2015) Massimo C Pernice et al. ISME Journal
- Global diversity and biogeography of deep-sea pelagic prokaryotes
- (2015) Guillem Salazar et al. ISME Journal
- Not all are free-living: high-throughput DNA metabarcoding reveals a diverse community of protists parasitizing soil metazoa
- (2015) S. Geisen et al. MOLECULAR ECOLOGY
- Metatranscriptome analyses indicate resource partitioning between diatoms in the field
- (2015) Harriet Alexander et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rarity in aquatic microbes: placing protists on the map
- (2015) Ramiro Logares et al. RESEARCH IN MICROBIOLOGY
- Eukaryotic plankton diversity in the sunlit ocean
- (2015) C. de Vargas et al. SCIENCE
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- Determinants of community structure in the global plankton interactome
- (2015) G. Lima-Mendez et al. SCIENCE
- Swarm v2: highly-scalable and high-resolution amplicon clustering
- (2015) Frédéric Mahé et al. PeerJ
- Patterns of Rare and Abundant Marine Microbial Eukaryotes
- (2014) Ramiro Logares et al. CURRENT BIOLOGY
- Pyrosequencing for assessing diversity of eukaryotic microbes: analysis of data on marine planktonic ciliates and comparison with traditional methods
- (2014) Luciana F. Santoferrara et al. ENVIRONMENTAL MICROBIOLOGY
- Evidence of concurrent local adaptation and high phenotypic plasticity in a polar microeukaryote
- (2014) Karin Rengefors et al. ENVIRONMENTAL MICROBIOLOGY
- A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses
- (2014) Pier Luigi Buttigieg et al. FEMS MICROBIOLOGY ECOLOGY
- Metacommunity organisation, spatial extent and dispersal in aquatic systems: patterns, processes and prospects
- (2014) Jani Heino et al. FRESHWATER BIOLOGY
- Oceanographic structure drives the assembly processes of microbial eukaryotic communities
- (2014) Adam Monier et al. ISME Journal
- Ciliates and the Rare Biosphere: A Review
- (2014) Micah Dunthorn et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
- Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context
- (2014) Micah Dunthorn et al. MOLECULAR BIOLOGY AND EVOLUTION
- Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia
- (2014) Luisa W. Hugerth et al. PLoS One
- Intracellular Diversity of the V4 and V9 Regions of the 18S rRNA in Marine Protists (Radiolarians) Assessed by High-Throughput Sequencing
- (2014) Johan Decelle et al. PLoS One
- “Candidatus Haloectosymbiotes riaformosensis” (Halobacteriaceae), an archaeal ectosymbiont of the hypersaline ciliate Platynematum salinarum
- (2014) Sabine Filker et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Ordering microbial diversity into ecologically and genetically cohesive units
- (2014) B. Jesse Shapiro et al. TRENDS IN MICROBIOLOGY
- The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
- (2014) Patrick J. Keeling et al. PLOS BIOLOGY
- Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity
- (2014) Laura Wegener Parfrey et al. Frontiers in Microbiology
- A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology
- (2013) Thorsten Stoeck et al. ENVIRONMENTAL MICROBIOLOGY
- Quantifying community assembly processes and identifying features that impose them
- (2013) James C Stegen et al. ISME Journal
- Patterns and Processes of Microbial Community Assembly
- (2013) D. R. Nemergut et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Can Abundance of Protists Be Inferred from Sequence Data: A Case Study of Foraminifera
- (2013) Alexandra A-T. Weber et al. PLoS One
- 454 Pyrosequencing to Describe Microbial Eukaryotic Community Composition, Diversity and Relative Abundance: A Test for Marine Haptophytes
- (2013) Elianne Egge et al. PLoS One
- Eukaryotic versus prokaryotic marine picoplankton ecology
- (2012) Ramon Massana et al. ENVIRONMENTAL MICROBIOLOGY
- Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes
- (2012) Jean-François Mangot et al. ENVIRONMENTAL MICROBIOLOGY
- Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study
- (2012) Charles Bachy et al. ISME Journal
- The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
- (2012) Laure Guillou et al. NUCLEIC ACIDS RESEARCH
- Meta-analyses of environmental sequence data identify anoxia and salinity as parameters shaping ciliate communities
- (2012) Dominik Forster et al. SYSTEMATICS AND BIODIVERSITY
- The rise of model protozoa
- (2012) David Montagnes et al. TRENDS IN MICROBIOLOGY
- CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms
- (2012) Jan Pawlowski et al. PLOS BIOLOGY
- Prevalence of partnerships between bacteria and ciliates in oxygen-depleted marine water columns
- (2012) William Orsi et al. Frontiers in Microbiology
- Concepts in protistology: Species definitions and boundaries
- (2011) Jens Boenigk et al. EUROPEAN JOURNAL OF PROTISTOLOGY
- Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood
- (2011) Simon A. Berger et al. SYSTEMATIC BIOLOGY
- pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
- (2010) Frederick A Matsen et al. BMC BIOINFORMATICS
- NOVEL COOPERATION EXPERIMENTALLY EVOLVED BETWEEN SPECIES
- (2010) William Harcombe EVOLUTION
- Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity
- (2010) VIOLA NOLTE et al. MOLECULAR ECOLOGY
- Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
- (2010) THORSTEN STOECK et al. MOLECULAR ECOLOGY
- Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms
- (2010) RALPH MEDINGER et al. MOLECULAR ECOLOGY
- Genomic and functional adaptation in surface ocean planktonic prokaryotes
- (2010) Shibu Yooseph et al. NATURE
- Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
- (2010) M. L. Cuvelier et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Hypotheses on the role of the protistan rare biosphere in a changing world
- (2009) DA Caron et al. AQUATIC MICROBIAL ECOLOGY
- Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities
- (2009) Thorsten Stoeck et al. BMC BIOLOGY
- A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes
- (2009) Linda A. Amaral-Zettler et al. PLoS One
- Infrequent marine–freshwater transitions in the microbial world
- (2009) Ramiro Logares et al. TRENDS IN MICROBIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation