标题
Disentangling the mechanisms shaping the surface ocean microbiota
作者
关键词
-
出版物
Microbiome
Volume 8, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-04-20
DOI
10.1186/s40168-020-00827-8
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions
- (2020) Máté Vass et al. Scientific Reports
- Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean
- (2019) Clara Ruiz-González et al. MOLECULAR ECOLOGY
- Forfeiting the priority effect: turnover defines biofilm community succession
- (2019) Colin J. Brislawn et al. ISME Journal
- A Reverse Ecology Approach Based on a Biological Definition of Microbial Populations
- (2019) Philip Arevalo et al. CELL
- Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
- (2019) Guillem Salazar et al. CELL
- Global Trends in Marine Plankton Diversity across Kingdoms of Life
- (2019) Federico M. Ibarbalz et al. CELL
- Contrasting prevalence of selection and drift in the community structuring of bacteria and microbial eukaryotes
- (2018) Ramiro Logares et al. ENVIRONMENTAL MICROBIOLOGY
- β-Diversity, Community Assembly, and Ecosystem Functioning
- (2018) Akira S. Mori et al. TRENDS IN ECOLOGY & EVOLUTION
- Distinct Oceanic Microbiomes From Viruses to Protists Located Near the Antarctic Circumpolar Current
- (2018) Flavia Flaviani et al. Frontiers in Microbiology
- Function and functional redundancy in microbial systems
- (2018) Stilianos Louca et al. Nature Ecology & Evolution
- FastSpar: rapid and scalable correlation estimation for compositional data
- (2018) Stephen C Watts et al. BIOINFORMATICS
- Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations
- (2018) Stefan Lambert et al. ISME Journal
- Quantifying long-term recurrence in planktonic microbial eukaryotes
- (2018) Caterina R. Giner et al. MOLECULAR ECOLOGY
- Are We Overestimating Protistan Diversity in Nature?
- (2018) David A. Caron et al. TRENDS IN MICROBIOLOGY
- Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities
- (2017) Wenxue Wu et al. ISME Journal
- Stochastic Community Assembly: Does It Matter in Microbial Ecology?
- (2017) Jizhong Zhou et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Evidence for environmental and ecological selection in a microbe with no geographic limits to gene flow
- (2017) Kerry A. Whittaker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Marine Bacterioplankton Seasonal Succession Dynamics
- (2017) Carina Bunse et al. TRENDS IN MICROBIOLOGY
- Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships
- (2017) Justin R. Seymour et al. Nature Microbiology
- A family of interaction-adjusted indices of community similarity
- (2016) Thomas Sebastian Benedikt Schmidt et al. ISME Journal
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Decoupling function and taxonomy in the global ocean microbiome
- (2016) S. Louca et al. SCIENCE
- Phytoplankton across Tropical and Subtropical Regions of the Atlantic, Indian and Pacific Oceans
- (2016) Marta Estrada et al. PLoS One
- Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
- (2015) Alma E. Parada et al. ENVIRONMENTAL MICROBIOLOGY
- Global diversity and biogeography of deep-sea pelagic prokaryotes
- (2015) Guillem Salazar et al. ISME Journal
- Macroecological patterns of archaeal ammonia oxidizers in the Atlantic Ocean
- (2015) Eva Sintes et al. MOLECULAR ECOLOGY
- Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
- (2015) Melanie Schirmer et al. NUCLEIC ACIDS RESEARCH
- Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes
- (2015) A. Z. Worden et al. SCIENCE
- Eukaryotic plankton diversity in the sunlit ocean
- (2015) C. de Vargas et al. SCIENCE
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- Patterns of Rare and Abundant Marine Microbial Eukaryotes
- (2014) Ramiro Logares et al. CURRENT BIOLOGY
- Metacommunity organisation, spatial extent and dispersal in aquatic systems: patterns, processes and prospects
- (2014) Jani Heino et al. FRESHWATER BIOLOGY
- The transition between the niche and neutral regimes in ecology
- (2014) C. K. Fisher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biogeographic patterns in ocean microbes emerge in a neutral agent-based model
- (2014) F. L. Hellweger et al. SCIENCE
- PEAR: a fast and accurate Illumina Paired-End reAd mergeR
- (2013) J. Zhang et al. BIOINFORMATICS
- BayesHammer: Bayesian clustering for error correction in single-cell sequencing
- (2013) Sergey I Nikolenko et al. BMC GENOMICS
- Beta diversity as the variance of community data: dissimilarity coefficients and partitioning
- (2013) Pierre Legendre et al. ECOLOGY LETTERS
- Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
- (2013) Ramiro Logares et al. ENVIRONMENTAL MICROBIOLOGY
- Quantifying community assembly processes and identifying features that impose them
- (2013) James C Stegen et al. ISME Journal
- Biogeography of the uncultured marine picoeukaryote MAST-4: temperature-driven distribution patterns
- (2013) Raquel Rodríguez-Martínez et al. ISME Journal
- Patterns and Processes of Microbial Community Assembly
- (2013) D. R. Nemergut et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Bacterial taxa-area and distance-decay relationships in marine environments
- (2013) L. Zinger et al. MOLECULAR ECOLOGY
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- General Patterns of Diversity in Major Marine Microeukaryote Lineages
- (2013) Massimo C. Pernice et al. PLoS One
- Marine bacteria exhibit a bipolar distribution
- (2013) W. J. Sul et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evidence for a persistent microbial seed bank throughout the global ocean
- (2013) S. M. Gibbons et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Associating microbiome composition with environmental covariates using generalized UniFrac distances
- (2012) Jun Chen et al. BIOINFORMATICS
- Body size and dispersal mode as key traits determining metacommunity structure of aquatic organisms
- (2012) T. Bie et al. ECOLOGY LETTERS
- Eukaryotic versus prokaryotic marine picoplankton ecology
- (2012) Ramon Massana et al. ENVIRONMENTAL MICROBIOLOGY
- Stochastic and deterministic assembly processes in subsurface microbial communities
- (2012) James C Stegen et al. ISME Journal
- Ocean Science: The power of plankton
- (2012) Paul Falkowski NATURE
- Beyond biogeographic patterns: processes shaping the microbial landscape
- (2012) China A. Hanson et al. NATURE REVIEWS MICROBIOLOGY
- Inferring Correlation Networks from Genomic Survey Data
- (2012) Jonathan Friedman et al. PLoS Computational Biology
- Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data
- (2011) J. Raes et al. Molecular Systems Biology
- Disentangling the Drivers of Diversity Along Latitudinal and Elevational Gradients
- (2011) N. J. B. Kraft et al. SCIENCE
- Detecting Novel Associations in Large Data Sets
- (2011) D. N. Reshef et al. SCIENCE
- Local and regional factors influencing bacterial community assembly
- (2011) Eva S. Lindström et al. Environmental Microbiology Reports
- A Holistic Approach to Marine Eco-Systems Biology
- (2011) Eric Karsenti et al. PLOS BIOLOGY
- Using null models to disentangle variation in community dissimilarity from variation in α-diversity
- (2011) Jonathan M. Chase et al. Ecosphere
- Eukaryotic Picoplankton in Surface Oceans
- (2010) Ramon Massana Annual Review of Microbiology
- Picante: R tools for integrating phylogenies and ecology
- (2010) S. W. Kembel et al. BIOINFORMATICS
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean
- (2010) Ludwig Jardillier et al. ISME Journal
- Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
- (2010) THORSTEN STOECK et al. MOLECULAR ECOLOGY
- Limits to gene flow in a cosmopolitan marine planktonic diatom
- (2010) G. Casteleyn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dormancy contributes to the maintenance of microbial diversity
- (2010) S. E. Jones et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- The merging of community ecology and phylogenetic biology
- (2009) Jeannine Cavender-Bares et al. ECOLOGY LETTERS
- Regional invariance among microbial communities
- (2009) Ãrjan Ãstman et al. ECOLOGY LETTERS
- Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities
- (2009) Anders F Andersson et al. ISME Journal
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- Controls on Diatom Biogeography in the Ocean
- (2009) P. Cermeno et al. SCIENCE
- Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species
- (2008) Jonathan B. Losos ECOLOGY LETTERS
- A latitudinal diversity gradient in planktonic marine bacteria
- (2008) J. A. Fuhrman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Microbial Engines That Drive Earth's Biogeochemical Cycles
- (2008) P. G. Falkowski et al. SCIENCE
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